View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3164_high_34 (Length: 251)
Name: NF3164_high_34
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_high_34 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 22380586 - 22380359
Alignment:
| Q |
23 |
gatgtgaaacttgttttaataggtggataatacatatataagatgatgtgactaaaccatatattgaatgaaattattccaacataattacatctgcggn |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22380586 |
gatgtgaaacttgttttaataggtggataatacatatataagatgatgtgactaaaccatatattgaatgaaattattccaacataattacatctgcgga |
22380487 |
T |
|
| Q |
123 |
nnnnnngtaatataaaatcaagtagtggtaaatatttttctagatctttaataattgttgaaattagtagaagataggnnnnnnnnntcacgtagtttca |
222 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
22380486 |
aaaaaagtaatataaaatcaagtggtggtaaatatttttctagatctttaataattgttgaaattagtagaagataggaaaaaaaaatcaagtagtttca |
22380387 |
T |
|
| Q |
223 |
aatatttttctacatctttaataattgtt |
251 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
22380386 |
aatatttttct-catctttaataattgtt |
22380359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 22380403 - 22380344
Alignment:
| Q |
136 |
aaaatcaagtagtggtaaatatttttctagatctttaataattgttgaaattagtagaaga |
196 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
22380403 |
aaaatcaagtagtttcaaatatttttctc-atctttaataattgttgatgttagtagaaga |
22380344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University