View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3164_high_41 (Length: 245)
Name: NF3164_high_41
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_high_41 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 39479203 - 39479432
Alignment:
| Q |
1 |
ataatattctgaggttaaacggtgatgttcaagtttcttcaatttaggttttattgtat----------cattcaatttcggaa------attgaac--- |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
39479203 |
ataatattctgaggttaaacggtgatgttcaagtttcttcaatttaggttttattgtattttattgtatcattcaatttcggaatggattattgaacgaa |
39479302 |
T |
|
| Q |
82 |
-ttttctgttgaagattttagatctatctctatttatcttctttgttttatgctttttggaattgaaattcagtaataataataggtgaattttttgagg |
180 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39479303 |
cttttctgttgaagattttagatctatatctatttatcttctttgttttatgctttttggaattgaaattcagtaataataataggtgaattttttgagg |
39479402 |
T |
|
| Q |
181 |
gtgtattttgttttctctcacgtgaattaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39479403 |
gtgtattttgttttctctcacgtgaattaa |
39479432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 55179216 - 55179154
Alignment:
| Q |
78 |
gaacttttctgttgaagattttagatctatctctatttatc-ttctttgttttatgctttttg |
139 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
55179216 |
gaacttttctgttgaagattgtatatctatctctatttatctttctttgttttatgttttttg |
55179154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 55179102 - 55179065
Alignment:
| Q |
154 |
taataataataggtgaattttttgagggtgtattttgt |
191 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
55179102 |
taataataataggtgaattttatgagggtgcattttgt |
55179065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University