View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_high_52 (Length: 222)
Name: NF3164_high_52
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 29922578 - 29922767
Alignment:
| Q |
18 |
gaaccaatactctctacgccaattctcttgatacccatcatgggttaaagaagtctcagccaaacagatcaatccattgcatgaaccaattatacgagag |
117 |
Q |
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| T |
29922578 |
gaaccaatactctctacgccaattctcttgatacccatcatgggttaaagaagtctcagccaaacaaatcaatccattgcatgaaccaattatacgagag |
29922677 |
T |
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| Q |
118 |
catatgtcgttgttgacatgatagtaagtgacactattgtaaggatcatctaaaagaagggtgaatgacgggttatctagtaaacgactt |
207 |
Q |
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| T |
29922678 |
catatgtcgttgttgacatgatagtaagtgacactattgtaaggatcatctaaaagaagggtgaatgacgggttatctagtaaacgactt |
29922767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 29880724 - 29880678
Alignment:
| Q |
74 |
cagccaaacagatcaatccattgcatgaaccaattatacgagagcat |
120 |
Q |
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| T |
29880724 |
cagccaaacagatcaaaccattgcaggtaccaactatacgagagcat |
29880678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 3625224 - 3625181
Alignment:
| Q |
74 |
cagccaaacagatcaatccattgcatgaaccaattatacgagag |
117 |
Q |
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| T |
3625224 |
cagccaaacatatcaatccattgcaggaaccaactatacgagag |
3625181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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