View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3164_high_7 (Length: 531)

Name: NF3164_high_7
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3164_high_7
NF3164_high_7
[»] chr1 (1 HSPs)
chr1 (19-500)||(45596377-45596874)


Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 500
Target Start/End: Complemental strand, 45596874 - 45596377
Alignment:
Q  19 aaaatctttctcttttgaatccttaataagtgtttttggaagaattgttaacgtaannnnnnnaaaaagtttatagtaannnnnnncttctttatgtaaa 118  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||       ||||||||||||||||       ||| ||||||||||    
T  45596874 aaaatctttctcttttgaatccttaataagtgtttttagaacaattgttaaagtaattttttaaaaaagtttatagtaatttttttcttttttatgtaaa 45596775  T
Q  119 ctcaactcgatttgactagtgagcagttcagttggaccattaatccgataaaatagtactactagatatgaacttctatctacttactattggaagacag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||    
T  45596774 ctcaactcgatttgactagtgagcagttcagttggaccattaatccgataaaatagtactactagatatgaacttctatc----tactattggaagacag 45596679  T
Q  219 catagaatggatgatcgaattgttttttatctttccatctacaggagagattaatgtcaca--------caccctcctgtcaaaaaataaagagaaatta 310  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||        |||||||||||||||||||||||||||||||    
T  45596678 catagaatggatgatcgaattgttttttatctttccatctacacaagagattaatgtcacacatttccccaccctcctgtcaaaaaataaagagaaatta 45596579  T
Q  311 tgaaaatgaattgtagaagcccacgttgagaaatattttgacacgttacacagttcgttcaagttcagctgataaatgaaactcgtcaacactatacacc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45596578 tgaaaatgaattgtagaagcccacgttgagaaatattttgacacgttacacagttcgttcaagttcagctgataaatgaaactcgtcaacactatacacc 45596479  T
Q  411 ttaaccaataaacattcattgccgatagtattgacttgtcttt------------tctctccaatccaccgcttcaaaaagttttcccacaacttcgcct 498  Q
    ||||||||||||||||||||||||||||||||| |||||||||            ||||||||||| ||||||||||||||||||| ||||||||| |||    
T  45596478 ttaaccaataaacattcattgccgatagtattgtcttgtcttttctcatcacttctctctccaatctaccgcttcaaaaagttttcacacaacttcacct 45596379  T

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