View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_high_8 (Length: 478)
Name: NF3164_high_8
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 48310445 - 48309978
Alignment:
| Q |
1 |
taaatgagctttgtcatacaatatgatataacataagaggttactttcccatcgtatgacaaataaatatttgaatcacgactaaaaatatatatttata |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| ||||||| ||||||||||| |
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| T |
48310445 |
taaatgagctttgtaatacaatatgatataacataagaggttagtttcccaccgtatgacaaataaatgtttgaatcacggctaaaaaaatatatttata |
48310346 |
T |
|
| Q |
101 |
tttggtttggactcctatttggagaagacctctgttcgtctgggcagcggacatgctttccgatctcctggtggtcgtcactagacgatcaatggtggtg |
200 |
Q |
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||||||||||| || | |||||||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48310345 |
tttggtttggaatcttgtttggagaagacctttattcgtttgggcagcggacatgcttttcgatctcctggtggtcgtcactagacgatcaatggtggtg |
48310246 |
T |
|
| Q |
201 |
agggaggatgtctggtcttggacactcagtcttgatggtcggtactcggcgaagtctgcgtgctcattccttattaaggaacttatggttacgggtatcc |
300 |
Q |
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| T |
48310245 |
agggaggatgtctggtcttggacgctcagtcttgatggtcggtactcggtgaagtctgcgtgctcattccttatcaaggatcttatggttatgggtatcc |
48310146 |
T |
|
| Q |
301 |
ctcagggagaggtcttgaaggcggtctcgagggtttggaagtcttgggccccgtctaaagtcattgttttttcttggcaactccttctcgacatgatccc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48310145 |
ctcagggagaggtcttgaaggcggtctcgagggtttggaagtcttgggccccgtctaaagtcattgttttttcttggcaactccttctcgacatgatccc |
48310046 |
T |
|
| Q |
401 |
ctctcatagtaacctcattaggtggggaatttcgctccctgagggaggtgtagggtgtgttttctgtg |
468 |
Q |
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| T |
48310045 |
ctctcgtagtaacctcattaggtggggaatttcgctccctgagggaggtgtagggtgtgttttctgtg |
48309978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 292 - 385
Target Start/End: Complemental strand, 12521240 - 12521149
Alignment:
| Q |
292 |
cgggtatccctcagggagaggtcttgaaggcggtctcgagggtttggaagtcttgggccccgtctaaagtcattgttttttcttggcaactcct |
385 |
Q |
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||||||| ||||| || |||||| | ||| ||||||||||||||| || |||||| |||||||||||| ||||||||||| ||||||||||| |
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| T |
12521240 |
cgggtattcctcaaggggaggtcgtacaggaggtctcgagggtttgaaaatcttgg--cccgtctaaagtgattgttttttcgtggcaactcct |
12521149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 422
Target Start/End: Original strand, 51870807 - 51870896
Alignment:
| Q |
333 |
gtttggaagtcttgggccccgtctaaagtcattgttttttcttggcaactccttctcgacatgatcccctctcatagtaacctcattagg |
422 |
Q |
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||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| || | |||||| || | | | |||||||||||| |
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| T |
51870807 |
gtttggaagtcttgggccccgtctaaagtgattgttttctcttggcagcttcttcttgataggatcccgtcgcgttgcaacctcattagg |
51870896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 25411184 - 25411136
Alignment:
| Q |
201 |
agggaggatgtctggtcttggacactcagtcttgatggtcggtactcgg |
249 |
Q |
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| T |
25411184 |
agggaggatgggtggtcttggacagttagtcttgatggtcggtactcgg |
25411136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 26558333 - 26558265
Alignment:
| Q |
314 |
cttgaaggcggtctcgagggtttggaagtcttgggccccgtctaaagtcattgttttttcttggcaact |
382 |
Q |
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|||| |||||||||| |||||||||||||||||||| |||||||||| |||||||| || |||||||| |
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| T |
26558333 |
cttgcaggcggtctctagggtttggaagtcttgggcttcgtctaaagttattgttttctcgtggcaact |
26558265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 424
Target Start/End: Original strand, 29682306 - 29682397
Alignment:
| Q |
333 |
gtttggaagtcttgggccccgtctaaagtcattgttttttcttggcaactccttctcgacatgatcccctctcatagtaacctcattaggtg |
424 |
Q |
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|||||||||||||||||||| ||||| || |||||||| || |||||||| ||||| || | |||||| || | ||| |||||||||||||| |
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| T |
29682306 |
gtttggaagtcttgggccccatctaaggtgattgttttctcgtggcaactgcttcttgataggatcccgtcgcgtagcaacctcattaggtg |
29682397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 319 - 377
Target Start/End: Original strand, 10994022 - 10994080
Alignment:
| Q |
319 |
aggcggtctcgagggtttggaagtcttgggccccgtctaaagtcattgttttttcttgg |
377 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
10994022 |
aggcggtctctactgtttggaagtcttgggccccgtctaaagtgattgttttctcttgg |
10994080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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