View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3164_low_1 (Length: 1156)
Name: NF3164_low_1
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_1 |
 | |
|
| [»] scaffold0363 (4 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 592; Significance: 0; HSPs: 28)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 18 - 714
Target Start/End: Original strand, 32633635 - 32634345
Alignment:
| Q |
18 |
catagtcattgtaacgacaagggataagcatgtgctggttagtggaggaattgacaaaattcatcaagttaaagaaatgaactctcgaaactccct---- |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32633635 |
catagtcattgtaacgacaagggataagcatgtgctggttagtggaggaattgacaaaattcatcaagttaaagaaatgaactctcgaaactccctccag |
32633734 |
T |
|
| Q |
114 |
----------tcaaagcttttgacaaagtcttacctaaggagggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctc |
203 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32633735 |
cttttcagcttcaatgcttttgacaaagtcttacctaaggagggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctc |
32633834 |
T |
|
| Q |
204 |
taaaagttttgggatcatttctttgttgcaaaagtgaaatagaatggaactgtacattagctaaactgaaggaaattcccaatgcagaaatcgataagat |
303 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32633835 |
taaaagttttgggatcatttctttgtagcaaaagtgaaatagaatggaactgtgcattagctaaactgaaggaaattcccaatgcagaaatcgataagat |
32633934 |
T |
|
| Q |
304 |
aatgagatggagttataatgaattagatgataaagagaaactcatatttctggacattgcatgctttttcaaaggacatgaaagggataggatgacaaca |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32633935 |
aatgagatggagttataatgaattagatgataaagagaaaaacatatttctggacattgcatgctttttcaaaggacatgaaagggataggatgacaaca |
32634034 |
T |
|
| Q |
404 |
atattaaatcagtgcggtttctttgcagatatagggataagaactcttttagacaaggctcttataagagttgactttgaaagttgcgtacaaatacatg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |
|
|
| T |
32634035 |
atattaaatcagtgcggtttctttgcagatatagggataagaactcttttagacaaggctcttataagagttgactttgaaaattgcatacaaatgcatg |
32634134 |
T |
|
| Q |
504 |
acttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagattgtgggatcctaaggaagtttatgatgt |
603 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32634135 |
acttgatacaagaaatgggcaaacaagtcgttcgtgaagaatctcttaagaatccagaacaaagcagtagattgtgggatcctaaggaagtttatgatgt |
32634234 |
T |
|
| Q |
604 |
attgaaaaataatagagtaagaaaatgataccctgactttcctccctaaacacatgttttctatacagattgtgcggcttactacagaaatactaagtac |
703 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
32634235 |
attgaaaaataatagagtaagaaaataataccctgactttccttcctatacacatgttttctatacagattatgcggcttactacagcaatactaagtac |
32634334 |
T |
|
| Q |
704 |
taacattcata |
714 |
Q |
| |
|
||||||||||| |
|
|
| T |
32634335 |
taacattcata |
32634345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 21 - 634
Target Start/End: Original strand, 13165252 - 13165879
Alignment:
| Q |
21 |
agtcattgtaacgacaagggataagcatgtgctggttagtggaggaattgacaaaattcatcaagttaaagaaatgaactctcgaaactcccttca---- |
116 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| | |||||||||||||| ||||| || ||||||| | |||||||| | ||| ||||| || |
|
|
| T |
13165252 |
agtcattgtgacgactagggataagcatgtgctgataagtggaggaattgaagaaatttatgaagttaagaagatgaactcccaaaattccctccagctt |
13165351 |
T |
|
| Q |
117 |
----------aagcttttgacaaagtcttacctaaggagggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaa |
206 |
Q |
| |
|
| |||||||||| ||||| ||||||||||||| ||||||||||||| |||||| |||||||||||||||||||| |||||||||||| | |
|
|
| T |
13165352 |
ttctgcttgaatgcttttgacactgtcttccctaaggagggatttgtggagctctcaaaaagagcgattgattacgccaaaggcatccctttagctctga |
13165451 |
T |
|
| Q |
207 |
aagttttgggatcatttctttgttgcaaaagtgaaatagaatggaactgtacattagctaaactgaaggaaattcccaatgcagaaatcgataagataat |
306 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||| ||| || | |||||||| || ||||| ||||||| ||||| |||| |||| | |
|
|
| T |
13165452 |
aagttttgggatcatcacttcgttgcaaaagtgaaatagaatggaattgtgcactgtctaaactggagaaaatttccaatgccgaaattgataggatact |
13165551 |
T |
|
| Q |
307 |
gagatggagttataatgaattagatgataaagagaaactcatatttctggacattgcatgctttttcaaaggacatgaaagggataggatgacaacaata |
406 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||| |||| |||||| |||| |
|
|
| T |
13165552 |
aagatggagttataatgaattggatgataaagagaaaaatatatttttggacattgcatgctttttcaaagggcgtgaaaggaatagcgtgacaaaaata |
13165651 |
T |
|
| Q |
407 |
ttaaatcagtgcggtttctttgcagatatagggataagaactcttttagacaaggctcttataagagttgactttgaaagttgcgtacaaatacatgact |
506 |
Q |
| |
|
|||||| | || ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | ||| || | ||||||| ||||||| |
|
|
| T |
13165652 |
ttaaatgactgtggtttctttgctgatatagggataagtcatcttttagacaaggctcttataagagttgactataaaaatttcatacaaatgcatgact |
13165751 |
T |
|
| Q |
507 |
tgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagattgtgggatcctaaggaagtttatgatgtatt |
606 |
Q |
| |
|
||||||| |||||||| | |||| | |||| ||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| ||||||||| |
|
|
| T |
13165752 |
tgatacaggaaatgggaagacaaattgttcgtgaagaatctcttaagaatcctggacaacgcagtagattatgtgatcctaaggaagtttttgatgtatt |
13165851 |
T |
|
| Q |
607 |
gaaaaataatagagtaagaaaatgatac |
634 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
13165852 |
gaaaaataatagagtaagagaatgatac |
13165879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 717 - 1120
Target Start/End: Original strand, 32634989 - 32635393
Alignment:
| Q |
717 |
tggatgcacgtcgcttaagagcatttctagtaacacttgttcaccagccctctgtgaattgaatgccatggactgcatcaatctccaagagttctaagtc |
816 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| ||| |
|
|
| T |
32634989 |
tggatgcatatcgcttaagagcatttccagtaacacttgttcaccagccctccgtgaattgaatgccatgaattgcatcaatctccaagagttctccgtc |
32635088 |
T |
|
| Q |
817 |
gcattttcttcagttgataannnnnnnn-gagtttgcctgagttgggtgcgaataaatttccatcatcaatattgcatacaaaaaatcttgaatattttt |
915 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32635089 |
acattttcttcagttgataatttgtttttgagtttgcctgagttcggtgcaaataaatttccatcatcaatattgcatacaaaaaatcttgaatattttt |
32635188 |
T |
|
| Q |
916 |
tatctcccgtcagtgatagtcttgtggatcttcctgaaaactttgccaattgtatttggcttgcgaattcactgaaaggtgaacgtgactcttccatcac |
1015 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32635189 |
tatctcctatcagtgatagtcttgtggatcttcctgaaaactttgccaattgtatctggcttgcgaattcactgaaaggtgaacgtgactcttccatcat |
32635288 |
T |
|
| Q |
1016 |
cttacataaagtacttcctactcctgctttcgtgaatgtaaaacacttgatattatttggtacaaatgttcctttcttgtctgaaatcccagacaatatt |
1115 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| ||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32635289 |
cttacataaaatacttcctagtcctgctttcctgagtgtaaaacacttaatattatttggtaatgatgttcctttcttgtctgaaatcccagacaacatt |
32635388 |
T |
|
| Q |
1116 |
tcctt |
1120 |
Q |
| |
|
||||| |
|
|
| T |
32635389 |
tcctt |
32635393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 119 - 625
Target Start/End: Complemental strand, 6310088 - 6309582
Alignment:
| Q |
119 |
gcttttgacaaagtcttacctaaggagggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttttgggat |
218 |
Q |
| |
|
||||||| ||||||| ||||||||| |||||||||||||||||| |||||| ||||||| |||||||| || ||||||||| | ||||| ||||||| |
|
|
| T |
6310088 |
gcttttggaaaagtctcacctaaggatggatatgtggagctctcaaaaagagcagttgattatgccaaaggaaatcctttagctttgaaagtattgggat |
6309989 |
T |
|
| Q |
219 |
catttctttgttgcaaaagtgaaatagaatggaactgtacattagctaaactgaaggaaattcccaatgcagaaatcgataagataatgagatggagtta |
318 |
Q |
| |
|
|||| ||| |||| ||||||||||| |||||| | ||| || | ||||||||||| |||||||| || | ||||| ||| ||| | |||| |||||| |
|
|
| T |
6309988 |
cattacttcgttgtaaaagtgaaattgaatgggattgtgcactggctaaactgaaagaaattccaaacactgaaattgattttatattcagattgagtta |
6309889 |
T |
|
| Q |
319 |
taatgaattagatgataaagagaaactcatatttctggacattgcatgctttttcaaaggacatgaaagggataggatgacaacaatattaaatcagtgc |
418 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| | |||||||| |||||||||||||||||||||||| |||| || |||| |||||||||| |||| |
|
|
| T |
6309888 |
taatgaattggatgataaagagaaagatatatttttagacattgcgtgctttttcaaaggacatgaaaggaatagaataacaaaaatattaaatgagtgt |
6309789 |
T |
|
| Q |
419 |
ggtttctttgcagatatagggataagaactcttttagacaaggctcttataagagttgactttgaaagttgcgtacaaatacatgacttgatacaagaaa |
518 |
Q |
| |
|
||||||||||| |||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
6309788 |
ggtttctttgctgatatagggataagtaatcttttagacaaggctcttataagcgttgactttgaaaattgcatacaaatgcatgacttgatacaagaaa |
6309689 |
T |
|
| Q |
519 |
tgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatag |
618 |
Q |
| |
|
|| |||||| | |||| ||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
6309688 |
caggaaaacaaattgttcgtgaagaatcacttaagaatcccggacaacgcagtagattatgtgatcctaaggaagtttgtaatgtattgaaaaataatag |
6309589 |
T |
|
| Q |
619 |
agtaaga |
625 |
Q |
| |
|
||||||| |
|
|
| T |
6309588 |
agtaaga |
6309582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 119 - 668
Target Start/End: Original strand, 14405200 - 14405749
Alignment:
| Q |
119 |
gcttttgacaaagtcttacctaaggagggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttttgggat |
218 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| ||||| || ||||| |||||| | ||||| ||||||| |
|
|
| T |
14405200 |
gcttttgacaaagtctcgcctaaggatggatatgtggagctctcaaaaagagcagttgattatgccaacggaaacccgttagctttgaaagtattgggat |
14405299 |
T |
|
| Q |
219 |
catttctttgttgcaaaagtgaaatagaatggaactgtacattagctaaactgaaggaaattcccaatgcagaaatcgataagataatgagatggagtta |
318 |
Q |
| |
|
| || ||| |||| ||||||||||| |||||| ||||| |||||||||||||||| ||||||| || ||||| ||| ||| | |||| |||||| |
|
|
| T |
14405300 |
ctttacttcgttgtaaaagtgaaattgaatgggactgtgcattagctaaactgaaaaaaattccaaacaacgaaattgattctatattcagattgagtta |
14405399 |
T |
|
| Q |
319 |
taatgaattagatgataaagagaaactcatatttctggacattgcatgctttttcaaaggacatgaaagggataggatgacaacaatattaaatcagtgc |
418 |
Q |
| |
|
| ||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| || |||| |||||||||| |||| |
|
|
| T |
14405400 |
tgatgaattggatgataaagagaaagatatatttttggacattgcatgctttttcaaaggacatgaaagaaatagcataacaaaaatattaaatgagtgt |
14405499 |
T |
|
| Q |
419 |
ggtttctttgcagatatagggataagaactcttttagacaaggctcttataagagttgactttgaaagttgcgtacaaatacatgacttgatacaagaaa |
518 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||||||||||| | || ||||||| | ||| |||| ||||||| || |||||||||||||||| |
|
|
| T |
14405500 |
ggtttctttgctgatattgggataagtcatcttttagacaaggctcttgtgagggttgactctaaaaattgcatacaaatgcacgacttgatacaagaaa |
14405599 |
T |
|
| Q |
519 |
tgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatag |
618 |
Q |
| |
|
|||| |||||| | |||| ||||||||| | ||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14405600 |
tgggaaaacaaattgttcgtgaagaatcacataagaatcccggacaacgcagtagattatgtgatcctaaggaagtttacgatgtattgaaaaataatag |
14405699 |
T |
|
| Q |
619 |
agtaagaaaatgataccctgactttcctccctaaacacatgttttctata |
668 |
Q |
| |
|
||||||| ||||| ||||| |||| ||| |||| ||| ||||||| |||| |
|
|
| T |
14405700 |
agtaagagaatgaaaccctcacttcccttcctacacatatgttttttata |
14405749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 207; E-Value: 1e-112
Query Start/End: Original strand, 119 - 633
Target Start/End: Complemental strand, 5607657 - 5607143
Alignment:
| Q |
119 |
gcttttgacaaagtcttacctaaggagggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttttgggat |
218 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||| |||||| |||||||| |||| ||| |||||||||||| | ||||| ||||||| |
|
|
| T |
5607657 |
gcttttgacaaagtctcacctaaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttagctttgaaagtattgggat |
5607558 |
T |
|
| Q |
219 |
catttctttgttgcaaaagtgaaatagaatggaactgtacattagctaaactgaaggaaattcccaatgcagaaatcgataagataatgagatggagtta |
318 |
Q |
| |
|
|||| ||| |||| |||||||||| ||||||| | ||| |||||| ||||||||| |||| || || ||||| ||| ||| | ||| ||||| |
|
|
| T |
5607557 |
cattacttcgttgtaaaagtgaaaaagaatgggattgtgcattagataaactgaaaaaaatgccaaacaacgaaattgattctatatttagaatgagttt |
5607458 |
T |
|
| Q |
319 |
taatgaattagatgataaagagaaactcatatttctggacattgcatgctttttcaaaggacatgaaagggataggatgacaacaatattaaatcagtgc |
418 |
Q |
| |
|
||||||||| ||| | | |||| || |||||| |||| ||||||||||||||||||||||| |||||| |||| || |||| |||||| ||| |||| |
|
|
| T |
5607457 |
taatgaattggataaaacagagcaaaatatatttttggatattgcatgctttttcaaaggacaggaaaggaatagcataacaaaaatattgaatgagtgt |
5607358 |
T |
|
| Q |
419 |
ggtttctttgcagatatagggataagaactcttttagacaaggctcttataagagttgactttgaaagttgcgtacaaatacatgacttgatacaagaaa |
518 |
Q |
| |
|
|| ||||| || |||||||||||||| ||||||||||||||||||| |||| ||||||| ||||| |||| ||||||| |||| ||||||||| |||| |
|
|
| T |
5607357 |
ggattcttcgctgatatagggataagtcatcttttagacaaggctcttgtaagggttgactctgaaaattgcatacaaatgcatggcttgatacaggaaa |
5607258 |
T |
|
| Q |
519 |
tgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatag |
618 |
Q |
| |
|
|||| |||||| | |||| ||||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5607257 |
tgggaaaacaaattgttcgtgaagaatcacttaagaatcccggacaacgcagtagattatgtgatcctgaggaagtttatgatgtattgaaaaataatag |
5607158 |
T |
|
| Q |
619 |
agtaagaaaatgata |
633 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
5607157 |
agtaagagaatgata |
5607143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 207; E-Value: 1e-112
Query Start/End: Original strand, 119 - 633
Target Start/End: Original strand, 5627713 - 5628227
Alignment:
| Q |
119 |
gcttttgacaaagtcttacctaaggagggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttttgggat |
218 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||| |||||| |||||||| |||| ||| |||||||||||| | ||||| ||||||| |
|
|
| T |
5627713 |
gcttttgacaaagtctcacctaaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttagctttgaaagtattgggat |
5627812 |
T |
|
| Q |
219 |
catttctttgttgcaaaagtgaaatagaatggaactgtacattagctaaactgaaggaaattcccaatgcagaaatcgataagataatgagatggagtta |
318 |
Q |
| |
|
|||| ||| |||| |||||||||| ||||||| | ||| |||||| ||||||||| |||| || || ||||| ||| ||| | ||| ||||| |
|
|
| T |
5627813 |
cattacttcgttgtaaaagtgaaaaagaatgggattgtgcattagataaactgaaaaaaatgccaaacaacgaaattgattctatatttagaatgagttt |
5627912 |
T |
|
| Q |
319 |
taatgaattagatgataaagagaaactcatatttctggacattgcatgctttttcaaaggacatgaaagggataggatgacaacaatattaaatcagtgc |
418 |
Q |
| |
|
||||||||| ||| | | |||| || |||||| |||| ||||||||||||||||||||||| |||||| |||| || |||| |||||| ||| |||| |
|
|
| T |
5627913 |
taatgaattggataaaacagagcaaaatatatttttggatattgcatgctttttcaaaggacaggaaaggaatagcataacaaaaatattgaatgagtgt |
5628012 |
T |
|
| Q |
419 |
ggtttctttgcagatatagggataagaactcttttagacaaggctcttataagagttgactttgaaagttgcgtacaaatacatgacttgatacaagaaa |
518 |
Q |
| |
|
|| ||||| || |||||||||||||| ||||||||||||||||||| |||| ||||||| ||||| |||| ||||||| |||| ||||||||| |||| |
|
|
| T |
5628013 |
ggattcttcgctgatatagggataagtcatcttttagacaaggctcttgtaagggttgactctgaaaattgcatacaaatgcatggcttgatacaggaaa |
5628112 |
T |
|
| Q |
519 |
tgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatag |
618 |
Q |
| |
|
|||| |||||| | |||| ||||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5628113 |
tgggaaaacaaattgttcgtgaagaatcacttaagaatcccggacaacgcagtagattatgtgatcctgaggaagtttatgatgtattgaaaaataatag |
5628212 |
T |
|
| Q |
619 |
agtaagaaaatgata |
633 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
5628213 |
agtaagagaatgata |
5628227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 119 - 633
Target Start/End: Original strand, 5550272 - 5550786
Alignment:
| Q |
119 |
gcttttgacaaagtcttacctaaggagggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttttgggat |
218 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||||||||||||||||| |||||| |||||||| |||| ||| |||||||||||| || |||| ||||||| |
|
|
| T |
5550272 |
gcttttaacaaagtctcacctaaggatggatatgtggagctctcaaaaagagcaattgattatgccagaggaaaccctttagctttacaagtattgggat |
5550371 |
T |
|
| Q |
219 |
catttctttgttgcaaaagtgaaatagaatggaactgtacattagctaaactgaaggaaattcccaatgcagaaatcgataagataatgagatggagtta |
318 |
Q |
| |
|
|||| ||| |||| |||| ||||| ||||||| | ||| ||| ||||||||||| |||| || || ||||| ||| ||| | |||| ||||| |
|
|
| T |
5550372 |
cattacttagttgtaaaaatgaaaaagaatgggattgtgcatcagctaaactgagaaaaataccaaacaatgaaattgattctatattcagattgagttt |
5550471 |
T |
|
| Q |
319 |
taatgaattagatgataaagagaaactcatatttctggacattgcatgctttttcaaaggacatgaaagggataggatgacaacaatattaaatcagtgc |
418 |
Q |
| |
|
||||||||| ||| | | |||| || |||||| |||| ||||||| | ||||||||||||| |||||| |||| || |||| |||||| ||| |||| |
|
|
| T |
5550472 |
taatgaattggataaaacagagcaaaatatatttttggatattgcattcgttttcaaaggacaggaaaggaatagcataacaaaaatattgaatgagtgt |
5550571 |
T |
|
| Q |
419 |
ggtttctttgcagatatagggataagaactcttttagacaaggctcttataagagttgactttgaaagttgcgtacaaatacatgacttgatacaagaaa |
518 |
Q |
| |
|
|| ||||| || |||||||||||||| ||||||||||||||||||| ||| || |||| ||||| |||| ||||||| |||| ||||||||| |||| |
|
|
| T |
5550572 |
gggttcttcgctgatatagggataagtcgtcttttagacaaggctcttgtaacggtagactctgaaaattgcatacaaatgcatggcttgatacaggaaa |
5550671 |
T |
|
| Q |
519 |
tgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatag |
618 |
Q |
| |
|
|||| |||||| | |||| ||||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
5550672 |
tgggaaaacaaattgttcgtgaagaatcacttaagaatcccggacaacgcagtagattatgtgatcctgaggaagtttatgacgtattgaaaaataatag |
5550771 |
T |
|
| Q |
619 |
agtaagaaaatgata |
633 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5550772 |
agtaagaaaatgata |
5550786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 716 - 834
Target Start/End: Original strand, 5647212 - 5647330
Alignment:
| Q |
716 |
ctggatgcacgtcgcttaagagcatttctagtaacacttgttcaccagccctctgtgaattgaatgccatggactgcatcaatctccaagagttctaagt |
815 |
Q |
| |
|
||||||| || | |||||||||| ||| |||||||||||||||||||||||| || ||||||||| ||| | ||| |||||||| ||||||||| ||| |
|
|
| T |
5647212 |
ctggatgtacattgcttaagagccttttcagtaacacttgttcaccagccctccatgtattgaatgctatgaattgcttcaatctcaaagagttctcagt |
5647311 |
T |
|
| Q |
816 |
cgcattttcttcagttgat |
834 |
Q |
| |
|
| ||||| ||||||||||| |
|
|
| T |
5647312 |
cccatttgcttcagttgat |
5647330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 730 - 1058
Target Start/End: Complemental strand, 5605688 - 5605362
Alignment:
| Q |
730 |
cttaagagcatttctagtaacacttgttcaccagccctctgtgaattgaatgccatggactgcatcaatctccaagagttctaagtcgcattttcttcag |
829 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| | ||||||| ||||| ||||||||||| ||||||||| | || |||||||||| | |
|
|
| T |
5605688 |
cttaagagcctttccagtaacacttgttcaccagccctcaattttttgaatgttatggattgcatcaatcttaaagagttctcaatcccattttcttccg |
5605589 |
T |
|
| Q |
830 |
ttgataannnnnnnngagtttgcctgagttgggtgcgaataaatttccatcatcaatattgcatacaaaaaatcttgaatattttttatctcccgtcagt |
929 |
Q |
| |
|
||||| | ||| | |||| || || |||| || |||||||||| |||||||||||| |||||||| || ||| | ||| | ||| |
|
|
| T |
5605588 |
ttgat--ttgagtttgtattttacagagtgggatgggaatgaacttccatcatctatattgcatacacaaaatcttaaaggctttggctttcctattagt |
5605491 |
T |
|
| Q |
930 |
gatagtcttgtggatcttcctgaaaactttgccaattgtatttggcttgcgaattcactgaaaggtgaacgtgactcttccatcaccttacataaagtac |
1029 |
Q |
| |
|
||| ||||||| |||||||||| ||||||| |||| |||||||||| | | | ||||||| |||||| |||||||| ||| |||||| ||||||||| |
|
|
| T |
5605490 |
gattgtcttgttgatcttcctgtaaacttttgcaatgatatttggctttcaagtccactgaacagtgaacatgactctttcataaccttagataaagtac |
5605391 |
T |
|
| Q |
1030 |
ttcctactcctgctttcgtgaatgtaaaa |
1058 |
Q |
| |
|
|| ||| |||||| ||||| | ||||||| |
|
|
| T |
5605390 |
tttctagtcctgccttcgtcagtgtaaaa |
5605362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 730 - 1058
Target Start/End: Original strand, 5629682 - 5630008
Alignment:
| Q |
730 |
cttaagagcatttctagtaacacttgttcaccagccctctgtgaattgaatgccatggactgcatcaatctccaagagttctaagtcgcattttcttcag |
829 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| | ||||||| ||||| ||||||||||| ||||||||| | || |||||||||| | |
|
|
| T |
5629682 |
cttaagagcctttccagtaacacttgttcaccagccctcaattttttgaatgttatggattgcatcaatcttaaagagttctcaatcccattttcttccg |
5629781 |
T |
|
| Q |
830 |
ttgataannnnnnnngagtttgcctgagttgggtgcgaataaatttccatcatcaatattgcatacaaaaaatcttgaatattttttatctcccgtcagt |
929 |
Q |
| |
|
||||| | ||| | |||| || || |||| || |||||||||| |||||||||||| |||||||| || ||| | ||| | ||| |
|
|
| T |
5629782 |
ttgat--ttgagtttgtattttacagagtgggatgggaatgaacttccatcatctatattgcatacacaaaatcttaaaggctttggctttcctattagt |
5629879 |
T |
|
| Q |
930 |
gatagtcttgtggatcttcctgaaaactttgccaattgtatttggcttgcgaattcactgaaaggtgaacgtgactcttccatcaccttacataaagtac |
1029 |
Q |
| |
|
||| ||||||| |||||||||| ||||||| |||| |||||||||| | | | ||||||| |||||| |||||||| ||| |||||| ||||||||| |
|
|
| T |
5629880 |
gattgtcttgttgatcttcctgtaaacttttgcaatgatatttggctttcaagtccactgaacagtgaacatgactctttcataaccttagataaagtac |
5629979 |
T |
|
| Q |
1030 |
ttcctactcctgctttcgtgaatgtaaaa |
1058 |
Q |
| |
|
|| ||| |||||| ||||| | ||||||| |
|
|
| T |
5629980 |
tttctagtcctgccttcgtcagtgtaaaa |
5630008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 185 - 379
Target Start/End: Complemental strand, 12176854 - 12176660
Alignment:
| Q |
185 |
aaaggcaaccctttagctctaaaagttttgggatcatttctttgttgcaaaagtgaaatagaatggaactgtacattagctaaactgaaggaaattccca |
284 |
Q |
| |
|
|||||||||||||| ||| | |||||| |||| ||||||||| || |||||| ||| ||||||||| || | ||| ||||||||||||||||||| |
|
|
| T |
12176854 |
aaaggcaaccctttggctttgaaagttctgggttcatttcttcgtacaaaaagtaaaaaagaatggaatagtgctttaaacaaactgaaggaaattccca |
12176755 |
T |
|
| Q |
285 |
atgcagaaatcgataagataatgagatggagttataatgaattagatgataaagagaaactcatatttctggacattgcatgctttttcaaagga |
379 |
Q |
| |
|
|||| ||||| | ||| | |||| | || ||| ||||||||||||||| ||||||| |||||||| ||| ||||||| |||||||||||| |
|
|
| T |
12176754 |
atgctgaaattcaaaaggtgttgaggttaagctatgatgaattagatgatacagagaaaaatatatttctagacgttgcatgttttttcaaagga |
12176660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 185 - 379
Target Start/End: Complemental strand, 12421282 - 12421088
Alignment:
| Q |
185 |
aaaggcaaccctttagctctaaaagttttgggatcatttctttgttgcaaaagtgaaatagaatggaactgtacattagctaaactgaaggaaattccca |
284 |
Q |
| |
|
|||||||||||||| ||| | |||||| |||| ||||||||| || |||||| ||| ||||||||| || | ||| ||||||||||||||||||| |
|
|
| T |
12421282 |
aaaggcaaccctttggctttgaaagttctgggttcatttcttcgtacaaaaagtaaaaaagaatggaatagtgctttaaacaaactgaaggaaattccca |
12421183 |
T |
|
| Q |
285 |
atgcagaaatcgataagataatgagatggagttataatgaattagatgataaagagaaactcatatttctggacattgcatgctttttcaaagga |
379 |
Q |
| |
|
|||| ||||| | ||| | |||| | || ||| ||||||||||||||| ||||||| |||||||| ||| ||||||| |||||||||||| |
|
|
| T |
12421182 |
atgctgaaattcaaaaggtgttgaggttaagctatgatgaattagatgatacagagaaaaatatatttctagacgttgcatgttttttcaaagga |
12421088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 727 - 834
Target Start/End: Complemental strand, 6308687 - 6308580
Alignment:
| Q |
727 |
tcgcttaagagcatttctagtaacacttgttcaccagccctctgtgaattgaatgccatggactgcatcaatctccaagagttctaagtcgcattttctt |
826 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||| ||| | ||||| | || | ||| |||||||||||| ||||||||| |||| ||||||| | |
|
|
| T |
6308687 |
tcgcttaagagcctttcgagtaacacttgttcaccagcgctccggaaattggaagctagggattgcatcaatctcaaagagttctcagtcacattttcat |
6308588 |
T |
|
| Q |
827 |
cagttgat |
834 |
Q |
| |
|
| |||||| |
|
|
| T |
6308587 |
ccgttgat |
6308580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 724 - 778
Target Start/End: Original strand, 14406404 - 14406458
Alignment:
| Q |
724 |
acgtcgcttaagagcatttctagtaacacttgttcaccagccctctgtgaattga |
778 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| || |||||| |
|
|
| T |
14406404 |
acgtcgcttaagagcatttccagtaacacttgttcaccagccctccgtcaattga |
14406458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 718 - 782
Target Start/End: Original strand, 13166872 - 13166936
Alignment:
| Q |
718 |
ggatgcacgtcgcttaagagcatttctagtaacacttgttcaccagccctctgtgaattgaatgc |
782 |
Q |
| |
|
||||| ||||||||||||||| |||| |||||||||||||| |||||| || ||||||||||||| |
|
|
| T |
13166872 |
ggatgtacgtcgcttaagagcctttccagtaacacttgttctccagccttccgtgaattgaatgc |
13166936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 5571740 - 5571811
Alignment:
| Q |
18 |
catagtcattgtaacgacaagggataagcatgtgctggttagtggaggaattgacaaaattcatcaagttaa |
89 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||||| | ||||||||||||||| ||||| || ||||||| |
|
|
| T |
5571740 |
catagtcattgtgacgactagggataaacatgtgctgataagtggaggaattgacgaaatttatgaagttaa |
5571811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 12176992 - 12176942
Alignment:
| Q |
61 |
ggaggaattgacaaaattcatcaagttaaagaaatgaactctcgaaactcc |
111 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
12176992 |
ggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactcc |
12176942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 12421420 - 12421370
Alignment:
| Q |
61 |
ggaggaattgacaaaattcatcaagttaaagaaatgaactctcgaaactcc |
111 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
12421420 |
ggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactcc |
12421370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 874 - 960
Target Start/End: Original strand, 14406555 - 14406641
Alignment:
| Q |
874 |
ttccatcatcaatattgcatacaaaaaatcttgaatattttttatctcccgtcagtgatagtcttgtggatcttcctgaaaactttg |
960 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| | | ||||| | ||| |||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
14406555 |
ttccatcatcattattgcatgcaaaaaatcttggaaactttttctttccaatcagtgattgtcttgtgaatcttactgaaaactttg |
14406641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 724 - 768
Target Start/End: Original strand, 5553137 - 5553181
Alignment:
| Q |
724 |
acgtcgcttaagagcatttctagtaacacttgttcaccagccctc |
768 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
5553137 |
acgtcgcttaagagcctttccagtaacacttgttcaccagccctc |
5553181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 378
Target Start/End: Complemental strand, 12188174 - 12187982
Alignment:
| Q |
186 |
aaggcaaccctttagctctaaaagttttgggatcatttctttgttgcaaaagtgaaatagaatggaactgtacattagctaaactgaaggaaattcccaa |
285 |
Q |
| |
|
||||||||||||| ||| | |||||| |||| ||||||||| || |||||| ||| ||||||||| || | ||| ||||| ||| |||||||||| |
|
|
| T |
12188174 |
aaggcaaccctttggctttgaaagttctgggttcatttcttcgtacaaaaagtaaaaaagaatggaatagtgctttaaacaaactaaagaaaattcccaa |
12188075 |
T |
|
| Q |
286 |
tgcagaaatcgataagataatgagatggagttataatgaattagatgataaagagaaactcatatttctggacattgcatgctttttcaaagg |
378 |
Q |
| |
|
||| ||||| | ||| | |||| | || ||| ||||||||||||||| ||| ||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
12188074 |
tgctgaaattcaaaaggtgttgaggttaagctatgatgaattagatgatacagaaaaagatatatttctagacattgcatgttttttcaaagg |
12187982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 378
Target Start/End: Complemental strand, 12432602 - 12432410
Alignment:
| Q |
186 |
aaggcaaccctttagctctaaaagttttgggatcatttctttgttgcaaaagtgaaatagaatggaactgtacattagctaaactgaaggaaattcccaa |
285 |
Q |
| |
|
||||||||||||| ||| | |||||| |||| ||||||||| || |||||| ||| ||||||||| || | ||| ||||| ||| |||||||||| |
|
|
| T |
12432602 |
aaggcaaccctttggctttgaaagttctgggttcatttcttcgtacaaaaagtaaaaaagaatggaatagtgctttaaacaaactaaagaaaattcccaa |
12432503 |
T |
|
| Q |
286 |
tgcagaaatcgataagataatgagatggagttataatgaattagatgataaagagaaactcatatttctggacattgcatgctttttcaaagg |
378 |
Q |
| |
|
||| ||||| | ||| | |||| | || ||| ||||||||||||||| ||| ||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
12432502 |
tgctgaaattcaaaaggtgttgaggttaagctatgatgaattagatgatacagaaaaagatatatttctagacattgcatgttttttcaaagg |
12432410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 500 - 626
Target Start/End: Complemental strand, 12187857 - 12187731
Alignment:
| Q |
500 |
catgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagattgtgggatcctaaggaagtttatg |
599 |
Q |
| |
|
||||||||| ||||||||||||| | ||| | |||| |||||||||| | || || || ||||||||||||||||||||| || ||| ||| ||| || |
|
|
| T |
12187857 |
catgacttgttacaagaaatgggtaggcaaattgttcgtgaagaatctatcaaaaaccctggacaacgcagtagattgtggaatgctagtgaaatttgtg |
12187758 |
T |
|
| Q |
600 |
atgtattgaaaaataatagagtaagaa |
626 |
Q |
| |
|
|||| |||| ||| |||| ||||||| |
|
|
| T |
12187757 |
atgtgttgacaaacaataatgtaagaa |
12187731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 500 - 626
Target Start/End: Complemental strand, 12432285 - 12432159
Alignment:
| Q |
500 |
catgacttgatacaagaaatgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagattgtgggatcctaaggaagtttatg |
599 |
Q |
| |
|
||||||||| ||||||||||||| | ||| | |||| |||||||||| | || || || ||||||||||||||||||||| || ||| ||| ||| || |
|
|
| T |
12432285 |
catgacttgttacaagaaatgggtaggcaaattgttcgtgaagaatctatcaaaaaccctggacaacgcagtagattgtggaatgctagtgaaatttgtg |
12432186 |
T |
|
| Q |
600 |
atgtattgaaaaataatagagtaagaa |
626 |
Q |
| |
|
|||| |||| ||| |||| ||||||| |
|
|
| T |
12432185 |
atgtgttgacaaacaataatgtaagaa |
12432159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 866 - 959
Target Start/End: Original strand, 13167021 - 13167114
Alignment:
| Q |
866 |
gaataaatttccatcatcaatattgcatacaaaaaatcttgaatattttttatctcccgtcagtgatagtcttgtggatcttcctgaaaacttt |
959 |
Q |
| |
|
|||| || ||||||||||||||||||||| |||||||||| | || | | ||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
13167021 |
gaatgaacttccatcatcaatattgcataaaaaaaatcttacaaggttagtctttcctatcagtgattgtcttgtggatcttcctgaaaacttt |
13167114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 14405104 - 14405156
Alignment:
| Q |
37 |
agggataagcatgtgctggttagtggaggaattgacaaaattcatcaagttaa |
89 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| ||||||||| || ||||||| |
|
|
| T |
14405104 |
agggataagcatgtgctgataagtggaggaatcgacaaaatttatgaagttaa |
14405156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 925 - 962
Target Start/End: Complemental strand, 6308488 - 6308451
Alignment:
| Q |
925 |
tcagtgatagtcttgtggatcttcctgaaaactttgcc |
962 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
6308488 |
tcagtgattgtcttgtggatcttccagaaaactttgcc |
6308451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 119 - 668
Target Start/End: Complemental strand, 13653 - 13104
Alignment:
| Q |
119 |
gcttttgacaaagtcttacctaaggagggatatgtggagctctcagaaagagtgattgattacgccaaaggcaaccctttagctctaaaagttttgggat |
218 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| ||||| || ||||| |||||| | ||||| ||||||| |
|
|
| T |
13653 |
gcttttgacaaagtctcgcctaaggatggatatgtggagctctcaaaaagagcagttgattatgccaacggaaacccgttagctttgaaagtattgggat |
13554 |
T |
|
| Q |
219 |
catttctttgttgcaaaagtgaaatagaatggaactgtacattagctaaactgaaggaaattcccaatgcagaaatcgataagataatgagatggagtta |
318 |
Q |
| |
|
| || ||| |||| ||||||||||| |||||| ||||| |||||||||||||||| ||||||| || ||||| ||| ||| | |||| |||||| |
|
|
| T |
13553 |
ctttacttcgttgtaaaagtgaaattgaatgggactgtgcattagctaaactgaaaaaaattccaaacaacgaaattgattctatattcagattgagtta |
13454 |
T |
|
| Q |
319 |
taatgaattagatgataaagagaaactcatatttctggacattgcatgctttttcaaaggacatgaaagggataggatgacaacaatattaaatcagtgc |
418 |
Q |
| |
|
| ||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| || |||| |||||||||| |||| |
|
|
| T |
13453 |
tgatgaattggatgataaagagaaagatatatttttggacattgcatgctttttcaaaggacatgaaagaaatagcataacaaaaatattaaatgagtgt |
13354 |
T |
|
| Q |
419 |
ggtttctttgcagatatagggataagaactcttttagacaaggctcttataagagttgactttgaaagttgcgtacaaatacatgacttgatacaagaaa |
518 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||||||||||| | || ||||||| | ||| |||| ||||||| || |||||||||||||||| |
|
|
| T |
13353 |
ggtttctttgctgatattgggataagtcatcttttagacaaggctcttgtgagggttgactctaaaaattgcatacaaatgcacgacttgatacaagaaa |
13254 |
T |
|
| Q |
519 |
tgggcaaacaattcgttcatgaagaatctcttaagaatcccggacaacgcagtagattgtgggatcctaaggaagtttatgatgtattgaaaaataatag |
618 |
Q |
| |
|
|||| |||||| | |||| ||||||||| | ||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13253 |
tgggaaaacaaattgttcgtgaagaatcacataagaatcccggacaacgcagtagattatgtgatcctaaggaagtttacgatgtattgaaaaataatag |
13154 |
T |
|
| Q |
619 |
agtaagaaaatgataccctgactttcctccctaaacacatgttttctata |
668 |
Q |
| |
|
||||||| ||||| ||||| |||| ||| |||| ||| ||||||| |||| |
|
|
| T |
13153 |
agtaagagaatgaaaccctcacttcccttcctacacatatgttttttata |
13104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 724 - 778
Target Start/End: Complemental strand, 12449 - 12395
Alignment:
| Q |
724 |
acgtcgcttaagagcatttctagtaacacttgttcaccagccctctgtgaattga |
778 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| || |||||| |
|
|
| T |
12449 |
acgtcgcttaagagcatttccagtaacacttgttcaccagccctccgtcaattga |
12395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 874 - 960
Target Start/End: Complemental strand, 12298 - 12212
Alignment:
| Q |
874 |
ttccatcatcaatattgcatacaaaaaatcttgaatattttttatctcccgtcagtgatagtcttgtggatcttcctgaaaactttg |
960 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| | | ||||| | ||| |||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
12298 |
ttccatcatcattattgcatgcaaaaaatcttggaaactttttctttccaatcagtgattgtcttgtgaatcttactgaaaactttg |
12212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 13749 - 13685
Alignment:
| Q |
37 |
agggataagcatgtgctggttagtggaggaattgacaaaattcatcaagttaaagaaatgaactc |
101 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| ||||||||| || ||||||| | |||||||| |
|
|
| T |
13749 |
agggataagcatgtgctgataagtggaggaatcgacaaaatttatgaagttaagaagatgaactc |
13685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 573 - 615
Target Start/End: Complemental strand, 36002775 - 36002733
Alignment:
| Q |
573 |
gattgtgggatcctaaggaagtttatgatgtattgaaaaataa |
615 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| |||| |
|
|
| T |
36002775 |
gattgtgggatcctaaggaagtgtatgatttattgaaatataa |
36002733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 343
Target Start/End: Complemental strand, 42265680 - 42265602
Alignment:
| Q |
265 |
taaactgaaggaaattcccaatgcagaaatcgataagataatgagatggagttataatgaattagatgataaagagaaa |
343 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| | ||| | |||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
42265680 |
taaactgaaggaaatttccaatgctgaaattcaaaaggtgttgagattaagttatgatgaattagatgatacagagaaa |
42265602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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