View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_low_11 (Length: 443)
Name: NF3164_low_11
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 425
Target Start/End: Original strand, 4615832 - 4616258
Alignment:
| Q |
11 |
agcaaccccccaaaacctgagaaactgcttatcattctaaattgtaaatgtgtatcatg----------taa---attttgtctcaatacaatgaagcaa |
97 |
Q |
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| T |
4615832 |
agcaaccccccaaaacctgagaaactgcttatcattctaaattgtaaatgtgtatcattccaaattttttaagtgattttgtctcaatacaatgaagcaa |
4615931 |
T |
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| Q |
98 |
atttcattaattcaccctcatttcttgttcaagaaaacaaaatagaatggcaaaatatattgctaacactagaaataaataacattaaaaaaggacactg |
197 |
Q |
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| T |
4615932 |
atttcattaattcaccctcatttcttgttcaagaaaacaaaatagaatggcaaaatatattgctaacactagaaataaataacattaaaaaagaacaccg |
4616031 |
T |
|
| Q |
198 |
gcaaaacatcttaaacacaagctcttctgtatcagtatcttcataacgtatatctactactactagtggacgtttgaattctaacatctgcagtgatttg |
297 |
Q |
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| T |
4616032 |
gcaaaacatcttaaacacaagctcttctgtatcagcatcttcataacgtatatctactactattagtggacgtttgaattctaacatctgcagtgatttg |
4616131 |
T |
|
| Q |
298 |
attaactttgtcatatgttgccgattattctctttcacacctttctaagacattttattttttgaccaaaatatgtctttactttcttaagacttaaaac |
397 |
Q |
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|||||||||||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||||| ||| |||| ||||| |||||| |||||| |
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| T |
4616132 |
attaactttgtcatatattgccaattattctctttcatgcctttccaagacattttattttttgaccaaaacatgcctttcctttc-taagacctaaaac |
4616230 |
T |
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| Q |
398 |
atgtgcaagcccgtgttatgattttagt |
425 |
Q |
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|||||||||||| ||||||||||||||| |
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| T |
4616231 |
atgtgcaagcccttgttatgattttagt |
4616258 |
T |
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