View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3164_low_14 (Length: 402)
Name: NF3164_low_14
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 387
Target Start/End: Complemental strand, 39479087 - 39478713
Alignment:
| Q |
13 |
aatattcaaccacaaaagcaaaatcctgacggaaacacccttcagtttataaagtctattctgcgaaatcacaccactgatagtagatttgtaactaagt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39479087 |
aatattcaaccacaaaagcaaaatcctgacggaaacacccttcagtttataaagtctattctgcgaaatcacaccactgatagtagatttgtaactaagt |
39478988 |
T |
|
| Q |
113 |
gtataactctcaataacaaagctacaagttttctcgaaatacacagaaaattgacctgtttctctgttaagggaatacccaattgctccttttggaagaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39478987 |
gtataactctcaataacaaagctacaagttttctcgaaatacacagaaaattgacctgtttctctgttaagggaatacccaattgctccttttggaagaa |
39478888 |
T |
|
| Q |
213 |
gacccattgggaaaccgtattccattagaagatcgtatgctgataaattttttggttcgattaaggtacatgatgataatgatgatgatattgttagaga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39478887 |
gacccattgggaaaccgtattccattagaagatcgtatgctgataaattttttggttcgattaaggtacatgatgataatgatgatgatattgttagaga |
39478788 |
T |
|
| Q |
313 |
gattaacaaaatcaacaccgatttaagcgaatacataattacaagttttgatttgtaaattggtttggttatgaa |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39478787 |
gattaacaaaatcaacaccgatttaagcgaatacataattacaagttttgaattgtaaattggtttggttatgaa |
39478713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University