View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3164_low_16 (Length: 379)
Name: NF3164_low_16
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_16 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 48449141 - 48449502
Alignment:
| Q |
18 |
gtatacactaggtacactatttacctcttatagaattcaacaagctttgcannnnnnncctaactaagaactcaatgtccaagttaacgtcttaaccttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48449141 |
gtatacactaggtacactatttacctcttatagaattcaacaagctttgcatttttttcctaactaagaactcaatgtccaagttaacgtcttaaccttt |
48449240 |
T |
|
| Q |
118 |
ggaggtacacacacaaaacaaagatgtttttgttttatatagtataggagttgcgttcattgatgggtaaattggtttaactatgacatgtttttgacat |
217 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48449241 |
ggaggcacacacacaaaacaaagatgtttttgttttatatagtataggagttgcgttcattgatgggtaaattagtttaactatgacatgtttttgacat |
48449340 |
T |
|
| Q |
218 |
ctttaagaaagctatcgttaataacaagaaactagatacatagttcttgtaacagttttcttataaaatccatattcatatgttaggcttgtttcaggca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48449341 |
ctttaagaaagctatcgttaataacaagaaactagatacatagttcttgtaacagttttcttataaaatccatattcatatgttaggcttgtttcaggca |
48449440 |
T |
|
| Q |
318 |
ccaaaacaacaaaacttaacatgtttgaagctttgtggcctgatatgaagtttttgattcac |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48449441 |
ccaaaacaacaaaacttaacatgtttgaagctttgtggtctgatatgaagtttttgattcac |
48449502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University