View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3164_low_2 (Length: 856)
Name: NF3164_low_2
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 32 - 515
Target Start/End: Complemental strand, 38456731 - 38456248
Alignment:
| Q |
32 |
cataggtgaaggaagtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatg |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456731 |
cataggtgaaggaagtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatg |
38456632 |
T |
|
| Q |
132 |
aaagtaactgtaaatttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtac |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456631 |
aaagtaactgtaaatttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtac |
38456532 |
T |
|
| Q |
232 |
ttcccacattattgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatatt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456531 |
ttcccacattattgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatatt |
38456432 |
T |
|
| Q |
332 |
aaattcatcttcttgtgaatcctcaacttgttggctactattcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagt |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38456431 |
aaattcatcttcttgtgaatcctcaacttgttggctactattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagt |
38456332 |
T |
|
| Q |
432 |
tttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38456331 |
tttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
38456248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 32 - 515
Target Start/End: Complemental strand, 38181370 - 38180888
Alignment:
| Q |
32 |
cataggtgaaggaagtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatg |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38181370 |
cataggtgaaggaagtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatg |
38181271 |
T |
|
| Q |
132 |
aaagtaactgtaaatttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtac |
231 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38181270 |
aaagtaactgtaaatataacac-ctcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtac |
38181172 |
T |
|
| Q |
232 |
ttcccacattattgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatatt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38181171 |
ttcccacattattgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatatt |
38181072 |
T |
|
| Q |
332 |
aaattcatcttcttgtgaatcctcaacttgttggctactattcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagt |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38181071 |
aaattcatcttcttgtgaatcctcaacttgttggctactattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagt |
38180972 |
T |
|
| Q |
432 |
tttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180971 |
tttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
38180888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 32 - 515
Target Start/End: Original strand, 38189761 - 38190243
Alignment:
| Q |
32 |
cataggtgaaggaagtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatg |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38189761 |
cataggtgaaggaagtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatg |
38189860 |
T |
|
| Q |
132 |
aaagtaactgtaaatttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtac |
231 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38189861 |
aaagtaactgtaaatataacac-ctcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtac |
38189959 |
T |
|
| Q |
232 |
ttcccacattattgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatatt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38189960 |
ttcccacattattgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatatt |
38190059 |
T |
|
| Q |
332 |
aaattcatcttcttgtgaatcctcaacttgttggctactattcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagt |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38190060 |
aaattcatcttcttgtgaatcctcaacttgttggctactattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagt |
38190159 |
T |
|
| Q |
432 |
tttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38190160 |
tttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
38190243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 32 - 515
Target Start/End: Complemental strand, 38208594 - 38208112
Alignment:
| Q |
32 |
cataggtgaaggaagtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatg |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38208594 |
cataggtgaaggaagtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatg |
38208495 |
T |
|
| Q |
132 |
aaagtaactgtaaatttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtac |
231 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38208494 |
aaagtaactgtaaatataacac-ctcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtac |
38208396 |
T |
|
| Q |
232 |
ttcccacattattgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatatt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38208395 |
ttcccacattattgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatatt |
38208296 |
T |
|
| Q |
332 |
aaattcatcttcttgtgaatcctcaacttgttggctactattcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagt |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38208295 |
aaattcatcttcttgtgaatcctcaacttgttggctactattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagt |
38208196 |
T |
|
| Q |
432 |
tttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38208195 |
tttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
38208112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 32 - 515
Target Start/End: Original strand, 38216986 - 38217468
Alignment:
| Q |
32 |
cataggtgaaggaagtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatg |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38216986 |
cataggtgaaggaagtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatg |
38217085 |
T |
|
| Q |
132 |
aaagtaactgtaaatttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtac |
231 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217086 |
aaagtaactgtaaatataacac-ctcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtac |
38217184 |
T |
|
| Q |
232 |
ttcccacattattgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatatt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217185 |
ttcccacattattgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatatt |
38217284 |
T |
|
| Q |
332 |
aaattcatcttcttgtgaatcctcaacttgttggctactattcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagt |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38217285 |
aaattcatcttcttgtgaatcctcaacttgttggctactattcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagt |
38217384 |
T |
|
| Q |
432 |
tttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38217385 |
tttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactgaatacaaattaatgacatgatcaac |
38217468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 46 - 491
Target Start/End: Original strand, 26032886 - 26033324
Alignment:
| Q |
46 |
gtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaaa |
145 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||||| | ||||||||||||||||| | |||||||||| ||||||||||| ||||| |
|
|
| T |
26032886 |
gtggaaggtatgaacatggtgggggtggagccataggtatataa------gaagttccaataatgcttc---ccctgaaattaatgaaagtaacagtaaa |
26032976 |
T |
|
| Q |
146 |
tttaacacactcatataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccaca---tta |
242 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26032977 |
tttaacac-ctcgtataaacaattttaacatataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagtacttcccacaatatta |
26033075 |
T |
|
| Q |
243 |
ttgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatattaaattcatctt |
342 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26033076 |
ttgtagaacatgtttgggacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtggtatatgaaattcatctt |
26033175 |
T |
|
| Q |
343 |
cttgtgaatcctcaacttgttggctactattcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttct |
442 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26033176 |
cttgtgaatcctcaatttgttggctactattcagctcatcatccagttccatgttgtcagggaagggtgacaagccacgcctttcaagttttctttttct |
26033275 |
T |
|
| Q |
443 |
cgcattccaaaagttcttgatgtcattatcgcttcttcccggtaactga |
491 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26033276 |
cgcgttccaaaagttcttgatgtcattatcgcttcttcccggtaactga |
26033324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 572 - 845
Target Start/End: Complemental strand, 38180808 - 38180534
Alignment:
| Q |
572 |
tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcaca |
671 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38180808 |
tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcaca |
38180709 |
T |
|
| Q |
672 |
tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccagcattttttgatacctcgttccaatttctggttccatggt |
771 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38180708 |
tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgtt |
38180609 |
T |
|
| Q |
772 |
tttccacatatgcttttaatatttcatcttcttcttttgaccatgttccttttttagtatcggtcg-tgatgatg |
845 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38180608 |
tttccacatatgcttttaatatttcatcttcttcttttgaccatgttccttttttagtatcggtcgatgatgatg |
38180534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 572 - 845
Target Start/End: Original strand, 38190323 - 38190597
Alignment:
| Q |
572 |
tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcaca |
671 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38190323 |
tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcaca |
38190422 |
T |
|
| Q |
672 |
tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccagcattttttgatacctcgttccaatttctggttccatggt |
771 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38190423 |
tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgtt |
38190522 |
T |
|
| Q |
772 |
tttccacatatgcttttaatatttcatcttcttcttttgaccatgttccttttttagtatcggtcg-tgatgatg |
845 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38190523 |
tttccacatatgcttttaatatttcatcttcttcttttgaccatgttccttttttagtatcggtcgatgatgatg |
38190597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 572 - 845
Target Start/End: Complemental strand, 38208032 - 38207758
Alignment:
| Q |
572 |
tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcaca |
671 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38208032 |
tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcaca |
38207933 |
T |
|
| Q |
672 |
tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccagcattttttgatacctcgttccaatttctggttccatggt |
771 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38207932 |
tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgtt |
38207833 |
T |
|
| Q |
772 |
tttccacatatgcttttaatatttcatcttcttcttttgaccatgttccttttttagtatcggtcg-tgatgatg |
845 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38207832 |
tttccacatatgcttttaatatttcatcttcttcttttgaccatgttccttttttagtatcggtcgatgatgatg |
38207758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 572 - 845
Target Start/End: Original strand, 38217548 - 38217822
Alignment:
| Q |
572 |
tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcaca |
671 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38217548 |
tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcaca |
38217647 |
T |
|
| Q |
672 |
tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccagcattttttgatacctcgttccaatttctggttccatggt |
771 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38217648 |
tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgtt |
38217747 |
T |
|
| Q |
772 |
tttccacatatgcttttaatatttcatcttcttcttttgaccatgttccttttttagtatcggtcg-tgatgatg |
845 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38217748 |
tttccacatatgcttttaatatttcatcttcttcttttgaccatgttccttttttagtatcggtcgatgatgatg |
38217822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 572 - 845
Target Start/End: Complemental strand, 38456168 - 38455894
Alignment:
| Q |
572 |
tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcaca |
671 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38456168 |
tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagatttttcttcttcactaaatggaccctttttcaca |
38456069 |
T |
|
| Q |
672 |
tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccagcattttttgatacctcgttccaatttctggttccatggt |
771 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38456068 |
tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcattttttgatacctcgttccaatttctggttccatgtt |
38455969 |
T |
|
| Q |
772 |
tttccacatatgcttttaatatttcatcttcttcttttgaccatgttccttttttagtatcggtcg-tgatgatg |
845 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38455968 |
tttccacatatgcttttaatatttcatcttcttcttttgaccatgttccttttttagtatcggtcgatgatgatg |
38455894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 572 - 833
Target Start/End: Original strand, 26033448 - 26033709
Alignment:
| Q |
572 |
tacctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcaca |
671 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26033448 |
tacctcctcagccagcttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtttcttcttcttcactaaatggaccctttttcaca |
26033547 |
T |
|
| Q |
672 |
tctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccagcattttttgatacctcgttccaatttctggttccatggt |
771 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26033548 |
tctggttgcaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccggcatttttcgatacctcgttccaatttctggttccatggt |
26033647 |
T |
|
| Q |
772 |
tttccacatatgcttttaatatttcatcttcttcttttgaccatgttccttttttagtatcg |
833 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26033648 |
tttccacatatgcttttaatatttcatcttcttcttttgaccatgttccttttttagtatcg |
26033709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 588 - 833
Target Start/End: Complemental strand, 38447258 - 38447013
Alignment:
| Q |
588 |
ttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcacatctggttgtaggtgat |
687 |
Q |
| |
|
||||||||||||||| ||||| |||| || |||| ||| |||||| ||| |||||||| |||||||||||||||||| ||| | ||| ||||| || |
|
|
| T |
38447258 |
ttagaccatttgaatccaccaaacttcttacgtaactgaaagactttattttcttcttctttactaaatggacccttttttacaccaggtcttaggttat |
38447159 |
T |
|
| Q |
688 |
tataccatcttagacgacaacttttaccgcaacgtataagcccagcattttttgatacctcgttccaatttctggttccatggttttccacatatgcttt |
787 |
Q |
| |
|
|||||||||| | ||| |||||| | ||| | || ||| || | || ||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38447158 |
tataccatctaaaacggcaacttcttccgaagtgtgcaagtcctgtgttctttgatacctcgtcccaatttctggttccatgtttttccacatatgcttt |
38447059 |
T |
|
| Q |
788 |
taatatttcatcttcttcttttgaccatgttccttttttagtatcg |
833 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
38447058 |
taatatttcatcctcttcttttgaccattttccttttttagtatcg |
38447013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 371 - 490
Target Start/End: Complemental strand, 38447566 - 38447447
Alignment:
| Q |
371 |
attcaactcatgatcaggttccatgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcatta |
470 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38447566 |
attcaactcatcatccagttccatgttgtcagggaagggtgacaagccacactttttatgttttctctttctcgcattccaaaagttcttgatgtcatta |
38447467 |
T |
|
| Q |
471 |
tcgcttcttcccggtaactg |
490 |
Q |
| |
|
||| ||||||| || ||||| |
|
|
| T |
38447466 |
tcggttcttccaggcaactg |
38447447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 38447688 - 38447655
Alignment:
| Q |
225 |
gaagtacttcccacattattgtagaacatgtttg |
258 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
38447688 |
gaagtacttcccacattattgtagaacatatttg |
38447655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 8e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 573 - 826
Target Start/End: Original strand, 53351852 - 53352110
Alignment:
| Q |
573 |
acctcatgagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcacat |
672 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | || || ||||| ||| ||||| |||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
53351852 |
acctcttgagccagcttagaccatttgaattcaccaaagttgttaaagaaccgaaagactttggttttttcttcttcactaaacggccccttcttcacat |
53351951 |
T |
|
| Q |
673 |
ctggttgtaggtgattataccatcttagacgacaacttttaccgcaacgtataagcccagcattttttgatacctcg-----ttccaatttctggttcca |
767 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
53351952 |
ctggtcgaaggtgattataccatcttagacgacaacttttaccgcaacgtataagccccgcatttcttgatacctcgttccattccaatttctggttcca |
53352051 |
T |
|
| Q |
768 |
tggttttccacatatgcttttaatatttcatcttcttcttttgaccatgttcctttttt |
826 |
Q |
| |
|
|| |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| |
|
|
| T |
53352052 |
tgtttttccacatatgcttttaacatttcatcctcttcttttgaccattttcctttttt |
53352110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 310 - 481
Target Start/End: Original strand, 53351249 - 53351429
Alignment:
| Q |
310 |
taaatttcaattgtggtatattaaattcatcttcttgtgaatcctcaacttgttggctact------------attcaactcatgatcaggttccatgtt |
397 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||| | ||||||||||| || ||||||| || |
|
|
| T |
53351249 |
taaatttcacttgcggtatattaaattcatcatcttgtgaatccttaacttgttggctatttgaaccacttttattcaactcatcattcagttccatctt |
53351348 |
T |
|
| Q |
398 |
gtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcc |
481 |
Q |
| |
|
||| || |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53351349 |
gtcaggaaagggtgacat---acgcttttcaagttttctttttcttgcattccaaaaattcttgatgtcattatcgcttcttcc |
53351429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 225 - 343
Target Start/End: Original strand, 6067743 - 6067860
Alignment:
| Q |
225 |
gaagtacttcccacattattgtagaacatgtttggaacatctaaaagtttttcatttatctcatcaaaaattgatggatattttctaaatttcaattgtg |
324 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6067743 |
gaagtacttcccacgttattgtagaacatgtttgggacatctaaaagtgtttcatttatctcataaaaaatttatggatattttctaaatttcaattgtg |
6067842 |
T |
|
| Q |
325 |
gtatattaaattcatcttc |
343 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
6067843 |
gtata-taaattcatcttc |
6067860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 580 - 815
Target Start/End: Complemental strand, 38342563 - 38342328
Alignment:
| Q |
580 |
gagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcacatctggttg |
679 |
Q |
| |
|
|||||| ||||||||||||||| |||||| |||| | | |||||||| | ||| || |||||||| ||||||||||||||| | | ||| ||| | |
|
|
| T |
38342563 |
gagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttctttgctaaatggaccctttcttaaatcaggtcg |
38342464 |
T |
|
| Q |
680 |
taggtgattataccatcttagacgacaacttttaccgcaacgtataagcccagcattttttgatacctcgttccaatttctggttccatggttttccaca |
779 |
Q |
| |
|
||| |||||||||||| | ||| ||||| || || || || ||| || | || ||||||||||| |||||||||| ||||||||| ||||| ||| |
|
|
| T |
38342463 |
tagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaaca |
38342364 |
T |
|
| Q |
780 |
tatgcttttaatatttcatcttcttcttttgaccat |
815 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38342363 |
tatgcttttaatatttcatcctcttcttttgaccat |
38342328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 580 - 815
Target Start/End: Complemental strand, 38446756 - 38446521
Alignment:
| Q |
580 |
gagccagcttagaccatttgaattcaccatactttatatagaactcaaaaactttagttttttcttcttcactaaatggaccctttttcacatctggttg |
679 |
Q |
| |
|
|||||| ||||||||||||||| |||||| |||| | | |||||||| | ||| || |||||||| ||||||||||||||| | | ||| ||| | |
|
|
| T |
38446756 |
gagccatcttagaccatttgaactcaccaaacttagaaaataactcaaagaatttttcttcttcttctttgctaaatggaccctttcttaaatcaggtcg |
38446657 |
T |
|
| Q |
680 |
taggtgattataccatcttagacgacaacttttaccgcaacgtataagcccagcattttttgatacctcgttccaatttctggttccatggttttccaca |
779 |
Q |
| |
|
||| |||||||||||| | ||| ||||| || || || || ||| || | || ||||||||||| |||||||||| ||||||||| ||||| ||| |
|
|
| T |
38446656 |
tagagtattataccatctaaaacggcaactgtttccacagtgtgcaagtcccgtgttctttgatacctctttccaatttccggttccatgtttttcaaca |
38446557 |
T |
|
| Q |
780 |
tatgcttttaatatttcatcttcttcttttgaccat |
815 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38446556 |
tatgcttttaatatttcatcctcttcttttgaccat |
38446521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 394 - 481
Target Start/End: Complemental strand, 38342826 - 38342739
Alignment:
| Q |
394 |
tgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcc |
481 |
Q |
| |
|
||||||| |||||||||||||||| | | ||| | ||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38342826 |
tgttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttgatgtcattatcggttcttcc |
38342739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 394 - 481
Target Start/End: Complemental strand, 38447019 - 38446932
Alignment:
| Q |
394 |
tgttgtcggggaagggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatcgcttcttcc |
481 |
Q |
| |
|
||||||| |||||||||||||||| | | ||| | ||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38447019 |
tgttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttgatgtcattatcggttcttcc |
38446932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 38343063 - 38343008
Alignment:
| Q |
175 |
atataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagta |
230 |
Q |
| |
|
|||||||||| ||||| ||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
38343063 |
atataaaagagaatggcattgcataatcaactcacctatcaatcaatgtagaagta |
38343008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 38447256 - 38447201
Alignment:
| Q |
175 |
atataaaagaaaatggaattacataatctactcacctatcaatcaatgttgaagta |
230 |
Q |
| |
|
|||||||||| ||||| ||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
38447256 |
atataaaagagaatggcattgcataatcaactcacctatcaatcaatgtagaagta |
38447201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 406 - 472
Target Start/End: Complemental strand, 4121709 - 4121643
Alignment:
| Q |
406 |
agggtgacaagccacgcttttcaagttttctttttctcgcattccaaaagttcttgatgtcattatc |
472 |
Q |
| |
|
||||||| | ||||| ||||| | |||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
4121709 |
agggtgataggccactctttttatattttctttttcttgcattccaaaagttcttgatagcattatc |
4121643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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