View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_low_23 (Length: 343)
Name: NF3164_low_23
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_23 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 1493266 - 1493600
Alignment:
| Q |
9 |
gagatgaaacttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgttcaggtcagtgttctatgtttttggaatt |
108 |
Q |
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| T |
1493266 |
gagatgaaacttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgttcaggtcagtgttcaatgtttttggaatt |
1493365 |
T |
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| Q |
109 |
agcagtgtcgacgtgtatctgtgttgtgtcaagtgtctgtgtcggactctgtgttttacattagttgctattaaactttataatgatgtgtttgtatatg |
208 |
Q |
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| T |
1493366 |
agcagtgtcgacgtgtatctgtgttgtgtcaagtgtctgtgtcggactctgtgttttacattagttactattaaactttataatgatgtgtttgtatatg |
1493465 |
T |
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| Q |
209 |
tgtggacagggatgtgatgcttctgtgatgttagctacaagaaacagcacttcagaaaaagataatccaattaatctttcactagctggtgatggatttg |
308 |
Q |
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| T |
1493466 |
tgtggacagggatgtgatgcttctgtgatgttagctacaagaaacagcacttcagaaaaagataatccaattaatctttcactagctggtgatggatttg |
1493565 |
T |
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| Q |
309 |
acacagtgatcaaagcaaaggctgcagttgatggt |
343 |
Q |
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| T |
1493566 |
acacagtgatcaaagcaaaggctgcagttgatggt |
1493600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 39800538 - 39800609
Alignment:
| Q |
14 |
gaaacttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgttcaggt |
85 |
Q |
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| T |
39800538 |
gaaatttcaacaaacttttgttactgttcctgctacccttcgtctcttctttcatgattgttttgttcaggt |
39800609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 39800797 - 39800838
Alignment:
| Q |
293 |
gctggtgatggatttgacacagtgatcaaagcaaaggctgca |
334 |
Q |
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| T |
39800797 |
gctggtgatggttttgacacagtgattaaagcaaaagctgca |
39800838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 53053585 - 53053645
Alignment:
| Q |
19 |
ttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgt |
79 |
Q |
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| T |
53053585 |
ttcaacaaacatttgtcactgctcctgccactcttagacttttcttccatgattgttttgt |
53053645 |
T |
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