View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_low_24 (Length: 341)
Name: NF3164_low_24
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 27 - 325
Target Start/End: Original strand, 43187860 - 43188158
Alignment:
| Q |
27 |
ttctgctatttgagtagtttaattgcggtttgagtggtttaaaacaattcaaccatgatccagagatattcttggttcaatgttcagtctttaaaacact |
126 |
Q |
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| T |
43187860 |
ttctgttatttgattagtttaattgcggtttgagtgatttaaaacaattcaaccatgatccagagatattcttggttcaatgttcagtctttaaaacact |
43187959 |
T |
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| Q |
127 |
gcaattaattgaattcatattgtgacctccactgatatctttcaattcatgaagaaaaatggaatggaatacaatgagacgaaatttgagaggatttgat |
226 |
Q |
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| T |
43187960 |
gcaattaattgaattcatattgtgacctccactgatatctttcagttcatgaagaaaaatggaatggaatacaatgagacgaaatttgagaggatttgat |
43188059 |
T |
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| Q |
227 |
tgtcgaaggtctgtttttctcaacatcatcgttgttacaactagaaagcatttagtgactcttactgagctacttgtcttatatctcggtgctcaactg |
325 |
Q |
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| T |
43188060 |
tgtcgaaggtctgtttttctcaacatcatcgttgttacaactagaaagcatttagtgactcttattgagctacttgtcttatatctcggtgctcaactg |
43188158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 22710090 - 22710133
Alignment:
| Q |
108 |
gttcagtctttaaaacactgcaattaattgaattcatattgtga |
151 |
Q |
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| T |
22710090 |
gttcagtctttaaaacactgcaattaattgaagtcatattgtga |
22710133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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