View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_low_27 (Length: 323)
Name: NF3164_low_27
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 3 - 305
Target Start/End: Complemental strand, 14048536 - 14048234
Alignment:
| Q |
3 |
cttagattagctggtgtatttcaaaacttgcttggaagtgacgaagaattggcaaagctcttcaatgatttgggtgacgatttgccaacaaaaatgtatt |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14048536 |
cttagattagctggtgtatttcaaaacttgcttggaagtgacgaagaattggcaaagctcttcaatgatttgggtgacgatttgccaacaaaaatgtatt |
14048437 |
T |
|
| Q |
103 |
gcaacaattcctacacaaatgcagtggcttatagcaggaaatatcttctcatcaagattcaaattgaaaaacattacacaaacaaatggaagacatggtt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14048436 |
gcaacaattcctacacaaatgcagtggcttatagcaggaaatatcttctcatcaagattcaaattgaaaaacattacacaaacaaatggaagacatggtt |
14048337 |
T |
|
| Q |
203 |
ggctcaagcttacaatactcatttcaatacaccatgggctatgatggcctttttagctgcaatgctagcattgattcttacttttatccaaacttggtgt |
302 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14048336 |
ggctcaagcttacaatactcatttcaatacaccatgggctatgattgcctttttagctgcaatgctagcattggttcttacttttatccaaacttggtgt |
14048237 |
T |
|
| Q |
303 |
gct |
305 |
Q |
| |
|
||| |
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|
| T |
14048236 |
gct |
14048234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 3 - 305
Target Start/End: Complemental strand, 14059907 - 14059605
Alignment:
| Q |
3 |
cttagattagctggtgtatttcaaaacttgcttggaagtgacgaagaattggcaaagctcttcaatgatttgggtgacgatttgccaacaaaaatgtatt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14059907 |
cttagattagctggtgtatttcaaaacttgcttggaagtgacgaagaattggcaaaactcttcaatgatttgggtgacgatttgccaacaaaaatgtatt |
14059808 |
T |
|
| Q |
103 |
gcaacaattcctacacaaatgcagtggcttatagcaggaaatatcttctcatcaagattcaaattgaaaaacattacacaaacaaatggaagacatggtt |
202 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14059807 |
gcaacaattcctacacagatgcggtggcttatagcaggagatatcttctcatcaaggttcaaattgaaaaacattatacaaacaaatggaagacatggtt |
14059708 |
T |
|
| Q |
203 |
ggctcaagcttacaatactcatttcaatacaccatgggctatgatggcctttttagctgcaatgctagcattgattcttacttttatccaaacttggtgt |
302 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
14059707 |
ggctcaagcttacaatacccatttcaatacaccgtgggctatgattgccttcttagctgcaatgctagcattggttcttacttttatccaaacttggtgt |
14059608 |
T |
|
| Q |
303 |
gct |
305 |
Q |
| |
|
||| |
|
|
| T |
14059607 |
gct |
14059605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 3 - 300
Target Start/End: Complemental strand, 15873494 - 15873197
Alignment:
| Q |
3 |
cttagattagctggtgtatttcaaaacttgcttggaagtgacgaagaattggcaaagctcttcaatgatttgggtgacgatttgccaacaaaaatgtatt |
102 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
15873494 |
cttagatcagctggtgtatttcaaaacttgcttggaagcgacaaagaattggcaaaactcttcaatgatttgggtgatgatttgccaacaaaaatgtatt |
15873395 |
T |
|
| Q |
103 |
gcaacaattcctacacaaatgcagtggcttatagcaggaaatatcttctcatcaagattcaaattgaaaaacattacacaaacaaatggaagacatggtt |
202 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||| ||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
15873394 |
gcaacaattcctacacaaatgcagtagcctatagcaagaaatatattctcatcaagcttcaaattgaaaagcattacacaaataaatggaagacatggtt |
15873295 |
T |
|
| Q |
203 |
ggctcaagcttacaatactcatttcaatacaccatgggctatgatggcctttttagctgcaatgctagcattgattcttacttttatccaaacttggt |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | || ||||| |||||||||| |||||||| |||| |
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|
| T |
15873294 |
ggctcaagcttacaacactcatttcaatacaccatgggctatgattgcctttttagctgcattactggcattagttcttactttcatccaaacatggt |
15873197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 3 - 300
Target Start/End: Original strand, 15900553 - 15900850
Alignment:
| Q |
3 |
cttagattagctggtgtatttcaaaacttgcttggaagtgacgaagaattggcaaagctcttcaatgatttgggtgacgatttgccaacaaaaatgtatt |
102 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
15900553 |
cttagatcagctggtgtatttcaaaacttgcttggaagcgatgaagaattggcaaaactcttcaatgatttgggtgatgatttgccaacaaaaatgtatt |
15900652 |
T |
|
| Q |
103 |
gcaacaattcctacacaaatgcagtggcttatagcaggaaatatcttctcatcaagattcaaattgaaaaacattacacaaacaaatggaagacatggtt |
202 |
Q |
| |
|
|| || | ||||||||| ||||| || ||||||| ||||||| || |||||||| | |||||||||| ||||||| ||| ||||||||||||||||| |
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|
| T |
15900653 |
gccactttgactacacaaaagcagtagcctatagcaagaaatatattttcatcaagcatgaaattgaaaagcattacaaaaataaatggaagacatggtt |
15900752 |
T |
|
| Q |
203 |
ggctcaagcttacaatactcatttcaatacaccatgggctatgatggcctttttagctgcaatgctagcattgattcttacttttatccaaacttggt |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||| | || || || |||||||||| |||||||| |||| |
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|
| T |
15900753 |
ggctcaagcttacaacactcatttcaatacaccatgggctatgattgcttttttagccgcagtactggctttagttcttactttcatccaaacctggt |
15900850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 15921611 - 15921900
Alignment:
| Q |
11 |
agctggtgtatttcaaaacttgcttggaagtgacgaagaattggcaaagctcttcaatgatttgggtgacgatttgccaacaaaaatgtattgcaacaat |
110 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||| | |
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|
| T |
15921611 |
agctggtgtatttcaaaacttgcttgggagcgatgaagatatggcaaaactcttcaatgatttgggtgatgatttgccaacaaaaatgtattgccacatt |
15921710 |
T |
|
| Q |
111 |
tcctacacaaatgcagtggcttatagcaggaaatatcttctcatcaagattcaaattgaaaaacattacacaaacaaatggaagacatggttggctcaag |
210 |
Q |
| |
|
|||||||||| ||||| || ||||||| ||||||| ||||||||||| | |||||||||| ||||||| ||| ||||||||||||||||| ||||||| |
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|
| T |
15921711 |
gcctacacaaaagcagtagcctatagcaagaaatatattctcatcaagcatgaaattgaaaagcattacaaaaataaatggaagacatggttagctcaag |
15921810 |
T |
|
| Q |
211 |
cttacaatactcatttcaatacaccatgggctatgatggcctttttagctgcaatgctagcattgattcttacttttatccaaacttggt |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| || |||| ||| ||| | || || || |||||||||| |||||||| |||| |
|
|
| T |
15921811 |
cttacaacactcatttcaatacaccatgggctatgattgctttttcagccgcagtactggctttagttcttactttcatccaaacctggt |
15921900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 3 - 300
Target Start/End: Complemental strand, 15880305 - 15880016
Alignment:
| Q |
3 |
cttagattagctggtgtatttcaaaacttgcttggaagtgacgaagaattggcaaagctcttcaatgatttgggtgacgatttgccaacaaaaatgtatt |
102 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
15880305 |
cttagatcagctggtgtatttcaaaacttgcttggaagcgacaaagaattggcaaaactcttcaatgatttgggtgatgatttgccaataaaaatgtatt |
15880206 |
T |
|
| Q |
103 |
gcaacaattcctacacaaatgcagtggcttatagcaggaaatatcttctcatcaagattcaaattgaaaaacattacacaaacaaatggaagacatggtt |
202 |
Q |
| |
|
|| ||| | ||||||||| ||||| || ||||||| ||||||| |||||||||| | ||||||||||| |||||||||| |||||||||| ||| || |
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|
| T |
15880205 |
gccacattgactacacaaaagcagtagcctatagcaagaaatatattctcatcaaacatgaaattgaaaaaaattacacaaataaatggaagatatgatt |
15880106 |
T |
|
| Q |
203 |
ggctcaagcttacaatactcatttcaatacaccatgggctatgatggcctttttagctgcaatgctagcattgattcttacttttatccaaacttggt |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| || |||||||| || | |||||||||||||||||||| ||||||||||||| |
|
|
| T |
15880105 |
ggctcaagcttgcaatactcatttcaatacaccatgg--------tgcatttttagccgctttactagcattgattcttactttcatccaaacttggt |
15880016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 15880582 - 15880512
Alignment:
| Q |
1 |
aacttagattagctggtgtatttcaaaacttgcttggaagtgacgaagaattggcaaagctcttcaatgat |
71 |
Q |
| |
|
||||||||||||| | |||| |||||||||||||||| || || |||||||||||||| |||||||||||| |
|
|
| T |
15880582 |
aacttagattagccgatgtacttcaaaacttgcttgggagcgatgaagaattggcaaatctcttcaatgat |
15880512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 44137279 - 44137215
Alignment:
| Q |
3 |
cttagattagctggtgtatttcaaaacttgcttggaagtgacgaagaattggcaaagctcttcaa |
67 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| || ||| | |||||||||||||| |||||||| |
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|
| T |
44137279 |
cttagatcagctggtgtattttaaaacttgcctgaaagcaatgaagaattggcaaatctcttcaa |
44137215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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