View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3164_low_28 (Length: 311)

Name: NF3164_low_28
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3164_low_28
NF3164_low_28
[»] chr1 (6 HSPs)
chr1 (19-297)||(31240019-31240297)
chr1 (9-80)||(31240574-31240645)
chr1 (115-272)||(31240143-31240300)
chr1 (88-200)||(31240553-31240665)
chr1 (82-177)||(31240451-31240545)
chr1 (155-225)||(31240501-31240571)
[»] chr8 (21 HSPs)
chr8 (19-195)||(35419023-35419199)
chr8 (133-251)||(35423292-35423410)
chr8 (115-272)||(35419020-35419177)
chr8 (38-200)||(35422996-35423158)
chr8 (100-182)||(35418810-35418892)
chr8 (154-235)||(35418660-35418741)
chr8 (106-195)||(35418894-35418983)
chr8 (38-202)||(35423122-35423286)
chr8 (89-273)||(35418694-35418884)
chr8 (19-68)||(35418828-35418877)
chr8 (142-206)||(35418957-35419021)
chr8 (142-290)||(35423001-35423149)
chr8 (154-201)||(35418633-35418680)
chr8 (113-200)||(35422945-35423032)
chr8 (201-273)||(35418890-35418962)
chr8 (142-290)||(35423127-35423275)
chr8 (21-68)||(35418908-35418955)
chr8 (54-168)||(35423312-35423426)
chr8 (23-68)||(35423380-35423425)
chr8 (142-206)||(35419173-35419236)
chr8 (115-147)||(35419235-35419267)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 31240297 - 31240019
Alignment:
19 aattataatgatcagcaaaatgaggatttgctagaggaattggaagatgacgagttgttacaagaacttgaagaatatcattttgaacagtatcctcata 118  Q
    |||||||||||||  ||||||| | ||||||||||  || ||||||||||  | ||  |||||||||| ||||||||||||||| |||||||||||||||    
31240297 aattataatgatccacaaaatgtgaatttgctagatcaaatggaagatgattattttctacaagaactggaagaatatcattttaaacagtatcctcata 31240198  T
119 attataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctcatag 218  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31240197 attataattatcaacaaaatatggatttggtagcagaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctcatag 31240098  T
219 ttataataatcaacaaaataagaatttgctagatgaattgaaaggtaatgatttttcaaaggaattgaaagatgattat 297  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
31240097 ttataataatcaacaaaataagtatttgctagatgaattgaaagataatgatttttcaaaggaattgaaagatgattat 31240019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 31240645 - 31240574
Alignment:
9 acatcatcacaattataatgatcagcaaaatgaggatttgctagaggaattggaagatgacgagttgttaca 80  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
31240645 acatcatcacaattttaatgatcagcaaaatgaggatttgctagaggaattggaagatgacgagttgctaca 31240574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 272
Target Start/End: Complemental strand, 31240300 - 31240143
Alignment:
115 cataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctc 214  Q
    |||||||||||| ||| ||||||| || ||||| |||   || ||||||||||| |||| ||| | ||| |||||||| |||||||| | || |||||||    
31240300 cataattataatgatccacaaaatgtgaatttgctagatcaaatggaagatgattattttctacaagaactggaagaatatcattttaaacagtatcctc 31240201  T
215 atagttataataatcaacaaaataagaatttgctagatgaattgaaaggtaatgattt 272  Q
    ||| ||||||| |||||||||||| | ||||| |||  |||||| ||| | |||||||    
31240200 ataattataattatcaacaaaatatggatttggtagcagaattggaagatgatgattt 31240143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 31240665 - 31240553
Alignment:
88 gaagaatatcattttgaacagtatcctcataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattgg 187  Q
    ||||||| || |||||| ||  ||| ||| |||| |||| |||| ||||||  ||||||| ||| ||||||||||||||| || |||||| |  ||||||    
31240665 gaagaatgtccttttgagcaacatcatcacaattttaatgatcagcaaaatgaggatttgctagaggaattggaagatgacgagttgctacagaaattgg 31240566  T
188 aagaagatcattt 200  Q
    |||||||| ||||    
31240565 aagaagatgattt 31240553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 31240545 - 31240451
Alignment:
82 gaacttgaagaatatcattttgaacagtatcctcataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgcta 177  Q
    ||||| |||||| || ||||||| ||||||||| ||||||||||| || || ||| | |||||||| |||   |||||||||||| ||||||||||    
31240545 gaactagaagaagattattttgagcagtatccttataattataatgat-aaaaaagtgtggatttgctagatcaattggaagatggtgatttgcta 31240451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 31240571 - 31240501
Alignment:
155 aattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctcatagttataat 225  Q
    |||||||||| ||||||||||||   ||| | ||||||||| |||||||||| |||||| ||| |||||||    
31240571 aattggaagaagatgatttgctattggaactagaagaagattattttgagcagtatccttataattataat 31240501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 35419023 - 35419199
Alignment:
19 aattataatgatcagcaaaatgaggatttgctagaggaattggaagatgacgagttgttacaagaacttgaagaatatcattttgaacagtatcctcata 118  Q
    |||||||||||||| ||||||| ||||||||||||  || ||||||||||  |  || |||||||| | |||||| |||||||||  |||||||||||||    
35419023 aattataatgatcaacaaaatgtggatttgctagatcaactggaagatgataatctgctacaagaattggaagaagatcattttgggcagtatcctcata 35419122  T
119 attataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagat 195  Q
    |||||| | |||||||||||||||||||| |||   ||||||||||||||||||||||| | |||||||||||||||    
35419123 attatattgatcaacaaaatatggatttgctagatcaattggaagatgatgatttgctagaggaattggaagaagat 35419199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 35423292 - 35423410
Alignment:
133 caaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctcatagttataataatcaac 232  Q
    |||||||||||||||| | |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||  || | ||||| ||||||    
35423292 caaaatatggatttggcaacggaattggaagatgatgatttgctagaggaattggaagaagatcattttgagcaatatccttgtaatgataatgatcaac 35423391  T
233 aaaataagaatttgctaga 251  Q
    ||||| |  ||||||||||    
35423392 aaaatgatgatttgctaga 35423410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 115 - 272
Target Start/End: Original strand, 35419020 - 35419177
Alignment:
115 cataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctc 214  Q
    |||||||||||| ||||||||||| |||||||| |||   || ||||||||||| || ||||| | |||||||||||||||||||||| ||| |||||||    
35419020 cataattataatgatcaacaaaatgtggatttgctagatcaactggaagatgataatctgctacaagaattggaagaagatcattttgggcagtatcctc 35419119  T
215 atagttataataatcaacaaaataagaatttgctagatgaattgaaaggtaatgattt 272  Q
    ||| ||||| | |||||||||||| | ||||||||||| ||||| ||| | |||||||    
35419120 ataattatattgatcaacaaaatatggatttgctagatcaattggaagatgatgattt 35419177  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 200
Target Start/End: Original strand, 35422996 - 35423158
Alignment:
38 atgaggatttgctagaggaattggaagatgacgagttgttacaagaacttgaagaatatcattttgaacagtatcctcataattataattatcaacaaaa 137  Q
    |||| |||||||||||| |||||||||| || || ||| |||| |||   |||||| |||   |||| ||||||| || |||||||||| |||||||||     
35422996 atgatgatttgctagagaaattggaagaagatgatttgctacaggaatcagaagaagatcgacttgagcagtatcttcgtaattataatgatcaacaaag 35423095  T
138 tatggatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattt 200  Q
    ||||||||||  ||   |||||||||||||||||||| || | ||||||||||||||| ||||    
35423096 tatggatttgccagatcaattggaagatgatgatttgttagaggaattggaagaagatgattt 35423158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 35418810 - 35418892
Alignment:
100 tttgaacagtatcctcataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatga 182  Q
    ||||| ||||||| || |||||||||| ||||||||| | |||||||| ||| ||||||||||||||||||||| ||| ||||    
35418810 tttgagcagtatcttcgtaattataatgatcaacaaactgtggatttgctagaggaattggaagatgatgattttctacatga 35418892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 35418660 - 35418741
Alignment:
154 gaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctcatagttataataatcaacaaa 235  Q
    ||||||||||| |||||||| |||   |||||| |||||||||||||||||||  ||||||||| ||||||| |||||||||    
35418660 gaattggaagaagatgattttctactggaattgcaagaagatcattttgagcagaatcctcataattataatgatcaacaaa 35418741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 35418894 - 35418983
Alignment:
106 cagtatcctcataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagat 195  Q
    ||||||||||||| ||||||| ||||||||||| |||||||| |||   |||||||||||||||||||  || | |||| ||||||||||    
35418894 cagtatcctcatatttataatgatcaacaaaatgtggatttgctagatcaattggaagatgatgattttgtagaggaatgggaagaagat 35418983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 202
Target Start/End: Original strand, 35423122 - 35423286
Alignment:
38 atgaggatttgctagaggaattggaagatgacgagttgttacaagaacttgaagaatatcattttgaacagtatcctcataattataattatcaacaaaa 137  Q
    |||| |||||| |||||||||||||||| || || ||| |||| |||   |||||| |||  ||||| | ||||| || ||||||| || ||||||||||    
35423122 atgatgatttgttagaggaattggaagaagatgatttgctacaggaatcagaagaagatcgatttgagcggtatcttcgtaattatcatgatcaacaaaa 35423221  T
138 tatggatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttg 202  Q
    | |||||||  |||   || |||||||||||||||| ||| | |||||||||||  |||||||||    
35423222 tgtggatttcctagatcaaatggaagatgatgattttctacaggaattggaagagtatcattttg 35423286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 273
Target Start/End: Original strand, 35418694 - 35418884
Alignment:
89 aagaatatcattttgaacagtatcctcataattataattatcaacaaaatatggatttggtagcggaattggaa---gatgatgatttgctaaatgaatt 185  Q
    ||||| |||||||||| ||| ||||||||||||||||| ||||||||| | |||||||   ||   ||||||||    ||||||||||| || | |||||    
35418694 aagaagatcattttgagcagaatcctcataattataatgatcaacaaagtttggatttttcagatcaattggaatataatgatgatttgttagaggaatt 35418793  T
186 g---gaagaagatcattttgagcaatatcctcatagttataataatcaacaaaataagaatttgctagatgaattgaaaggtaatgatttt 273  Q
    |   ||||||||||  |||||||| |||| || || ||||||| ||||||||| |  | |||||||||| |||||| ||| | ||||||||    
35418794 gggagaagaagatcgatttgagcagtatcttcgtaattataatgatcaacaaactgtggatttgctagaggaattggaagatgatgatttt 35418884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 35418828 - 35418877
Alignment:
19 aattataatgatcagcaaaatgaggatttgctagaggaattggaagatga 68  Q
    |||||||||||||| |||| || |||||||||||||||||||||||||||    
35418828 aattataatgatcaacaaactgtggatttgctagaggaattggaagatga 35418877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 35418957 - 35419021
Alignment:
142 gatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagca 206  Q
    ||||| |||| ||||| |||||| |||||||  ||| ||||||||||||||||||||||||||||    
35418957 gattttgtagaggaatgggaagaagatgattcactacatgaattggaagaagatcattttgagca 35419021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 290
Target Start/End: Original strand, 35423001 - 35423149
Alignment:
142 gatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctcatagttataataatcaacaaaataaga 241  Q
    |||||| ||| | |||||||||| |||||||||||| | ||||  ||||||||||   ||||||| |||| || || ||||||| ||||||||| || |     
35423001 gatttgctagagaaattggaagaagatgatttgctacaggaatcagaagaagatcgacttgagcagtatcttcgtaattataatgatcaacaaagtatgg 35423100  T
242 atttgctagatgaattgaaaggtaatgatttttcaaaggaattgaaaga 290  Q
    |||||| |||| ||||| ||| | ||||||| | | |||||||| ||||    
35423101 atttgccagatcaattggaagatgatgatttgttagaggaattggaaga 35423149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 35418633 - 35418680
Alignment:
154 gaattggaagatgatgatttgctaaatgaattggaagaagatcatttt 201  Q
    |||||||||| ||||||||||||| ||||||||||||||||| |||||    
35418633 gaattggaaggtgatgatttgctacatgaattggaagaagatgatttt 35418680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 200
Target Start/End: Original strand, 35422945 - 35423032
Alignment:
113 ctcataattataattatcaacaaaatatggatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattt 200  Q
    |||||||||||||| ||||||||| | ||||||||  |    ||||||||||||||||||||||| |  |||||||||||||| ||||    
35422945 ctcataattataatgatcaacaaagtgtggatttgccatatcaattggaagatgatgatttgctagagaaattggaagaagatgattt 35423032  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 273
Target Start/End: Original strand, 35418890 - 35418962
Alignment:
201 tgagcaatatcctcatagttataataatcaacaaaataagaatttgctagatgaattgaaaggtaatgatttt 273  Q
    |||||| |||||||||| ||||||| |||||||||||  | ||||||||||| ||||| ||| | ||||||||    
35418890 tgagcagtatcctcatatttataatgatcaacaaaatgtggatttgctagatcaattggaagatgatgatttt 35418962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 290
Target Start/End: Original strand, 35423127 - 35423275
Alignment:
142 gatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagcaatatcctcatagttataataatcaacaaaataaga 241  Q
    |||||| ||| |||||||||||| |||||||||||| | ||||  ||||||||||  |||||||  |||| || || |||| || |||||||||||  |     
35423127 gatttgttagaggaattggaagaagatgatttgctacaggaatcagaagaagatcgatttgagcggtatcttcgtaattatcatgatcaacaaaatgtgg 35423226  T
242 atttgctagatgaattgaaaggtaatgatttttcaaaggaattgaaaga 290  Q
    |||| |||||| || || ||| | ||||||||  | |||||||| ||||    
35423227 atttcctagatcaaatggaagatgatgattttctacaggaattggaaga 35423275  T

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Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 35418908 - 35418955
Alignment:
21 ttataatgatcagcaaaatgaggatttgctagaggaattggaagatga 68  Q
    |||||||||||| ||||||| ||||||||||||  |||||||||||||    
35418908 ttataatgatcaacaaaatgtggatttgctagatcaattggaagatga 35418955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 35423312 - 35423426
Alignment:
54 ggaattggaagatgacgagttgttacaagaacttgaagaatatcattttgaacagtatcctcataattataattatcaacaaaatatggatttggtagcg 153  Q
    ||||||||||||||| || ||| || | ||| | |||||| |||||||||| || ||||||  |||| ||||| |||||||||||   |||||| ||| |    
35423312 ggaattggaagatgatgatttgctagaggaattggaagaagatcattttgagcaatatccttgtaatgataatgatcaacaaaatgatgatttgctagag 35423411  T
154 gaattggaagatgat 168  Q
    || || |||||||||    
35423412 gagttagaagatgat 35423426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 35423380 - 35423425
Alignment:
23 ataatgatcagcaaaatgaggatttgctagaggaattggaagatga 68  Q
    |||||||||| |||||||| |||||||||||||| || ||||||||    
35423380 ataatgatcaacaaaatgatgatttgctagaggagttagaagatga 35423425  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 35419173 - 35419236
Alignment:
142 gatttggtagcggaattggaagatgatgatttgctaaatgaattggaagaagatcattttgagca 206  Q
    |||||| ||| |||||||||||| |||||||  ||| | ||| ||||||||||||||||||||||    
35419173 gatttgctagaggaattggaagaagatgattcactaca-gaactggaagaagatcattttgagca 35419236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 35419235 - 35419267
Alignment:
115 cataattataattatcaacaaaatatggatttg 147  Q
    |||||||||||| ||||||||||||||||||||    
35419235 cataattataatgatcaacaaaatatggatttg 35419267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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