View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_low_29 (Length: 294)
Name: NF3164_low_29
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 48594705 - 48594438
Alignment:
| Q |
9 |
agcacagaaacatattgcatatgcaatgagcaagaataagaaacacatgaagtctctcatgggaaaagtgcaaggttttagccttccatctcttggtggt |
108 |
Q |
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| T |
48594705 |
agcacagaaacatattgcatatgcaatgagcaagaataagaaacacatgaagtctctcatgggaaaagtgcaaggttttagccttccatctcttggtggt |
48594606 |
T |
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| Q |
109 |
tgctttgacggctgtcgcgaccaagcacaaggctcgggattcgggacgaggatatggaacctgagtgataagccagtggagctgcaaataagggtgggat |
208 |
Q |
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| T |
48594605 |
tgctttgacggctgtcgcgaccaagcacaaggctcgggattcgggacgaggatatggaacctgagtgataagccagtggagctgcaaataagggtgggat |
48594506 |
T |
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| Q |
209 |
caatactgaaaaagattcatacattgaagccagggtcttcaaagagactcaaatgtaaaaacatatat |
276 |
Q |
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| T |
48594505 |
caatactgaaaaagattcatacattgaagccagggtcttcaaagagactcaaatgtaaaaacatatat |
48594438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 59 - 276
Target Start/End: Original strand, 7624666 - 7624883
Alignment:
| Q |
59 |
agtctctcatgggaaaagtgcaaggttttagccttccatctcttggtggttgctttgacggctgtcgcgaccaagcacaaggctcgggattcgggacgag |
158 |
Q |
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| T |
7624666 |
agtctctcatggggaaaatgagaggtttgagccttcaatctcttggaggttgctttgatacctgctatgatcagactcaagcctatggattagggacaag |
7624765 |
T |
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| Q |
159 |
gatatggaacctgagtgataagccagtggagctgcaaataagggtgggatcaatactgaaaaagattcatacattgaagccagggtcttcaaagagactc |
258 |
Q |
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| T |
7624766 |
gatttggaacctgagtgataggccagtggagctacaaataagggtaggatcaatactgaagaaggttcatattttgaagccagggtcttcaaagagagtg |
7624865 |
T |
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| Q |
259 |
aaatgtaaaaacatatat |
276 |
Q |
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| T |
7624866 |
aaaagtaaacgcatatat |
7624883 |
T |
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