View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3164_low_3 (Length: 616)
Name: NF3164_low_3
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 30 - 598
Target Start/End: Original strand, 25933090 - 25933654
Alignment:
| Q |
30 |
ctacacccccaccaccatcaacaacaactgatctaatcactagaaattcatgaacccaaaacaacaaaagctataattccttaaacctatnnnnnnnnta |
129 |
Q |
| |
|
||||||| |||| |||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| | |
|
|
| T |
25933090 |
ctacacctccactaccatcaacaacaacttatctaatcaccagaaattcatgaacccataacaacaaaagctctaattccttaaacctataaaaaag--a |
25933187 |
T |
|
| Q |
130 |
tgaatccctgttttattttttctttctcccatcaaatgaacacaaaatccagttcaaattgaatttcctagaaagcgacggacaccacgtgaatcaaatg |
229 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
25933188 |
tgaatccatgtttaattttttctttctcccatcaaatgaacacaaaacccagttcaaattgaatttcctagaaagtgatggacaccacgtgaatcaaatg |
25933287 |
T |
|
| Q |
230 |
gaagatatgggcnnnnnnnnagagaggaagatatggactttgataatgtcaaaactgaaattccaagacagttttgagaatatttcaattcacgtcttaa |
329 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25933288 |
gaagatatgggcttttttttagagaggaagatatggactttgataatgtcaaaactgaaattccaagacagttttgagaatatttcaattcacatcttaa |
25933387 |
T |
|
| Q |
330 |
aatccattcaattcgttcactagaatagagttggagtagaagctca--cacttcttacaatttctctcatttccttcatgtctactctagtatgcactat |
427 |
Q |
| |
|
|||| ||||| || ||||||| ||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25933388 |
aatcgattcagttggttcactggaacagagttggagtagaagctcaaccacttcttacaatttctcacatttccttcatgtctactctagtatgcactat |
25933487 |
T |
|
| Q |
428 |
agttaaattccatcatacagagaagccatttcaaatgttattaacttcaagaaagatgcataagaagctcaaccacttttttatttaagtagtgacactt |
527 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
25933488 |
agttaaattccatcatacagagaagctatttcaaatgttattaacttcaacaaagatgcatcagaagctcagtcacttttttatttaatcagtgacactc |
25933587 |
T |
|
| Q |
528 |
gaaatgtgatgtgtatttatttatatggcgacccttgttgagagatgaaaacgacaaaggccacatgtgtt |
598 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25933588 |
caaatgtgatgtg----tatttatatggcaacccttgttgagagatgaaaacgacaaaggccacatgtgtt |
25933654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 439
Target Start/End: Original strand, 15647560 - 15647607
Alignment:
| Q |
392 |
tctcatttccttcatgtctactctagtatgcactatagttaaattcca |
439 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| | ||| |||||||| |
|
|
| T |
15647560 |
tctcatttccttcatgtctactctagtacgcaccaaagtaaaattcca |
15647607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University