View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_low_39 (Length: 250)
Name: NF3164_low_39
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_39 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 6825430 - 6825193
Alignment:
| Q |
13 |
aaaatcattgaatcaaaaccacaagagtatctcattactaaattaattcaagcaatcaataaataaatacatagaaatacgaaatcgatgaagaaaggat |
112 |
Q |
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| T |
6825430 |
aaaatcattgaatcaaaaccacaagagtatctcattactaaattaattcaagcaatcaataaataaatacatacaaatacgaaatcgatgaagaaaggat |
6825331 |
T |
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| Q |
113 |
gcttacgatattagaatcttgaagaggacgagtcaaagtatgatcacattgaacctgaagaggaatcaagggagaaccaacaagtttaagcaaagcaatg |
212 |
Q |
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| T |
6825330 |
gcttacgatattagaatcttgaagaggacgagtcaaagtatgatcacattgaacctgaagaggaatcaagggagaaccaacaagtttaagcaaagcaatg |
6825231 |
T |
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| Q |
213 |
aattcattattagaagtagcagaaagatgcgaacattt |
250 |
Q |
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| T |
6825230 |
aattcattattagaagtagcagaaagatgcgaacattt |
6825193 |
T |
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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 52296099 - 52296012
Alignment:
| Q |
141 |
cgagtcaaagtatgatcacattgaacctgaagaggaatcaagggagaaccaacaagtttaagcaaagcaatgaattcattattagaag |
228 |
Q |
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|||||||||||||||||| ||||||||||||||||||| | |||| ||| ||||| |||||||| || ||||||||||||| |||| |
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| T |
52296099 |
cgagtcaaagtatgatcagattgaacctgaagaggaataagaggagcacccacaagcttaagcaatgcggtgaattcattatttgaag |
52296012 |
T |
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