View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_low_4 (Length: 604)
Name: NF3164_low_4
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 12 - 596
Target Start/End: Original strand, 34866112 - 34866694
Alignment:
| Q |
12 |
atgaaccgctactaatggtcaactctgtataagatactaaacccctactgtgaatagaggaaagacacattcaactatatatcaatatttatctgtagaa |
111 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34866112 |
atgacccgctactaatggtcaactctgtatacgatactaaacccctactgtgaatagaggaaagacacgttcaactatatatcaatatttatctgtagaa |
34866211 |
T |
|
| Q |
112 |
ccagcaggtaatttataaaagcaatgtaactcctgcatagcacaaggttttattgctttatatatttctaataggaataagtaatctcgtattcgataag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866212 |
ccagcaggtaatttataaaagcaatgtaactcctgcatagcacaaggttttattgctttatatatttctaataggaataagtaatctcgtattcgataag |
34866311 |
T |
|
| Q |
212 |
tattgaagcacttgcaaaaccggctacactacaaagctttactcgagctttccagttagcccttctgtaggtagcactttgtgagacatcgacaaccagt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866312 |
tattgaagcacttgcaaaaccggctacactacaaagctttactcgagctttccagttagcccttctgtaggtagcactttgtgagacatcgacaaccag- |
34866410 |
T |
|
| Q |
312 |
ctctctgataccatttgataagtagtcgagagcctttgaagaaatctcccttaaagctagctgtcaagaaggaagaacctaacaactcaaatactacccg |
411 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866411 |
-tctctgataccatttgataagtagtcgagagcatttggagaaatctcccttaaagctagctgtcaagaaggaagaacctaacaactcaaatactacccg |
34866509 |
T |
|
| Q |
412 |
atgctagacttaggccctcccaaaatacccaagttcctgtcaatattttacttatttacttgcattaataaataagccacctataaattgaattaaggga |
511 |
Q |
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| T |
34866510 |
atgctagacttaggccctcccaaaatacccaagttcctgtcaatattttacttatttacttgcattaataaataagccacctataaattgaattaaggga |
34866609 |
T |
|
| Q |
512 |
gtgtttggaagagcttatttacaacttatttgaatttacctgatgacataagcccttgtcgaagtgttcagaacatgacagaact |
596 |
Q |
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| T |
34866610 |
gtgtttggaagagcttatttacaacttatttgaatttacctgatgacataagcccttgtcgaagtgttcagaacatgacagaact |
34866694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 427 - 596
Target Start/End: Complemental strand, 51857530 - 51857361
Alignment:
| Q |
427 |
cctcccaaaatacccaagttcctgtcaatattttacttatttacttgcattaataaataagccacctataaattgaattaagggagtgtttggaagagct |
526 |
Q |
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||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| || |
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| T |
51857530 |
cctcccaaaatacccaagtccctgtcaatattttactcatctacttgcattaataaataagccacatataaatagtattaagggagtgtttggaagatct |
51857431 |
T |
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| Q |
527 |
tatttacaacttatttgaatttacctgatgacataagcccttgtcgaagtgttcagaacatgacagaact |
596 |
Q |
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|| | ||||||| |||||||||||||||||||| | |||| |||||||||||| ||||||||||||||| |
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| T |
51857430 |
tactaacaacttttttgaatttacctgatgacacatgcccctgtcgaagtgtttggaacatgacagaact |
51857361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 407
Target Start/End: Complemental strand, 51857638 - 51857575
Alignment:
| Q |
346 |
tttgaagaaatctc--ccttaaagctagctgtcaagaaggaagaacctaacaactcaaatacta |
407 |
Q |
| |
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|||| ||||||||| ||| ||||||||||||||||||||||||||| | | ||| |||||||| |
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| T |
51857638 |
tttggagaaatctctgcctaaaagctagctgtcaagaaggaagaaccaagccacttaaatacta |
51857575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 512 - 549
Target Start/End: Original strand, 11171478 - 11171515
Alignment:
| Q |
512 |
gtgtttggaagagcttatttacaacttatttgaattta |
549 |
Q |
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||||||||||||| |||||||||||||||||||||||| |
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| T |
11171478 |
gtgtttggaagagtttatttacaacttatttgaattta |
11171515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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