View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_low_40 (Length: 250)
Name: NF3164_low_40
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 61 - 247
Target Start/End: Original strand, 4836092 - 4836272
Alignment:
| Q |
61 |
atgactacaagctgacccatagccactacatatttatagaaccatagtttgtgccacatcgaaagtttgaaaaacatagagatgtaaactgccattataa |
160 |
Q |
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| T |
4836092 |
atgaccacaagctgacctatagccactacatatttatagaaccatagtttgtcccacatcgaaagtttgaaaaacatagagatgtaaactgccattataa |
4836191 |
T |
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| Q |
161 |
ataaagcctacatcactctgtcaaggaatataagttacgttacaattccattgttagtgcatcaaagactcatagtcatttaaattt |
247 |
Q |
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| T |
4836192 |
ataaagcctacaacactctgccaagaagta-----tatgttgcaatt-cattgttagtgcatcaaaggctcatagtcgtttgaattt |
4836272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 4817754 - 4817842
Alignment:
| Q |
84 |
cactacatatttatagaaccatagtttgtgccacatcgaaagtttgaaaaacatagagatgtaaactgccattataaataaagcctaca |
172 |
Q |
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| T |
4817754 |
cactacatatttatagagccatagtttgtcccacatcgaaagtttgagaaacttagagatgtaaactactattataaataaagcctaca |
4817842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 4798602 - 4798702
Alignment:
| Q |
90 |
atatttatagaaccatagtttgtgccacatcgaaagtttgaaaaacatagagatgtaaactgccattataaataaagcctacatcactctgtcaaggaat |
189 |
Q |
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| T |
4798602 |
atatttatagaaccatagtttgtcccacatcggaagtttgagaaacttagagatgtaaactaccattataaataaagcttacaacactttgttatggaat |
4798701 |
T |
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| Q |
190 |
a |
190 |
Q |
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| T |
4798702 |
a |
4798702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 4836020 - 4836072
Alignment:
| Q |
14 |
agatcatcgaagcattgagatctatataacacatgcaatcattgatgatgact |
66 |
Q |
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| T |
4836020 |
agatcatagaagaattgagatctatataacacatgcaatcattgatgatgact |
4836072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 4817697 - 4817745
Alignment:
| Q |
14 |
agatcatcgaagcattgagatctatataacacatgcaatcattgatgat |
62 |
Q |
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| T |
4817697 |
agatcatagatgaattcagatctatataacacatgcattcattgatgat |
4817745 |
T |
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