View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_low_42 (Length: 246)
Name: NF3164_low_42
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 55340223 - 55339995
Alignment:
| Q |
1 |
tatgagcaagctgcttgcatttcctgcgtttgttgctttgttatcatgacatatctacgaaagtactagttattggcgacaggttctataaaagtgctca |
100 |
Q |
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| T |
55340223 |
tatgagcaagctgcttgcatttcctgcgtttgttgctttgttatcatgacatatctacgaaagtactagttattggcgacagtttctataaaagtgctca |
55340124 |
T |
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| Q |
101 |
tttgacgtctaatatttacactttcctatagtacatactatttcggactgggtcaaggcacaatctatttaggaatcatggcctaatcaaaggagctaca |
200 |
Q |
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| T |
55340123 |
tgtgacgtctaatatttacactttgctatagtacatactatttcggactgggtcaaggcacaatctatttaggaatcatggcctaatcaaaggagctaca |
55340024 |
T |
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| Q |
201 |
ccatgtttagaaggaggatcatacacaac |
229 |
Q |
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| T |
55340023 |
ccatgtttagaaggaggatcatacacaac |
55339995 |
T |
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