View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3164_low_44 (Length: 242)
Name: NF3164_low_44
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 55340223 - 55340461
Alignment:
| Q |
1 |
agcactcagcgtttttgagttcagtttcaattaatttggtctgtcaaatagaggtaaaaatttagtgtcaatttatgtttgttcttagtgcatcgataag |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
55340223 |
agcactcggcgtttttgagttcagtttcaattaatttggtctgtcaaatagaggtaaaaatttagtgtcaatttatgtttgttcttagtgcatagataag |
55340322 |
T |
|
| Q |
101 |
taggcaacttttcctttttctgcttcacaagttaagattccacaaagtacctagaaagagtggttaggggtgttttaacttgggagaatttattcttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
55340323 |
taggcaacttttcctttttctgcttcacaagttaagattccacaaagtacctagaaagagtggttaggggtg-tttatcttgggagaatttattcttgtt |
55340421 |
T |
|
| Q |
201 |
gcttttcaatgttccacatccactcttgaccattcctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55340422 |
gcttttcaatgttccacatccactcttgaccattcctttg |
55340461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University