View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_low_45 (Length: 240)
Name: NF3164_low_45
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 49497650 - 49497817
Alignment:
| Q |
19 |
cttcgttcattgcgactgcgagggatgcacacattctcgttcatgttcccattcataaataatac--tactacaagaagcaccagcatgcatgcgtgcac |
116 |
Q |
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| T |
49497650 |
cttcgttcattgcaactgcaagggatgcacacattctcgttcatgttcccattcataaataatactgtactacaagaagcaccagcatgcatgcgtgcac |
49497749 |
T |
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| Q |
117 |
tataattttaagaattttcgtggtaacttcttatgtagattccgtaaataaactatctttcttgatcaa |
185 |
Q |
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| T |
49497750 |
tataatttt-ataattttcatggtaatttcttatgtagattccgtaaataaactatctttcttgatcaa |
49497817 |
T |
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