View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_low_47 (Length: 239)
Name: NF3164_low_47
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_47 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 39788072 - 39788291
Alignment:
| Q |
19 |
tctacaacaacttaaaaaacaagagaagatataggtagccacaagactcgggcattttgaagacaagttcaaagaactaaaagagaatattattcaagtc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39788072 |
tctacaacaacttaaaaaacaagagaagatataggtagccacaagactcgggcattttgaagacaagttcaaagaactaaaagagaatattattcaagtc |
39788171 |
T |
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| Q |
119 |
acgtacggatnnnnnnnnnggaaagtgcatatggggtatgagtaggtgaagagtgctatatgcacttttgggtgaagagtgctattctcaaagggttact |
218 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39788172 |
acgtacggat-aaaaaaaaggaaagtgcatatggggtatgagtaggtgaagagtgctatatgcacttttgggtgaagagtgctattctcaaagggttact |
39788270 |
T |
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| Q |
219 |
tttttgagacttctacggtgc |
239 |
Q |
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|||||| |||||||||||||| |
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| T |
39788271 |
tttttgggacttctacggtgc |
39788291 |
T |
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