View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_low_5 (Length: 570)
Name: NF3164_low_5
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_5 |
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| [»] scaffold0526 (2 HSPs) |
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Alignment Details
Target: scaffold0526 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: scaffold0526
Description:
Target: scaffold0526; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 13 - 542
Target Start/End: Original strand, 2191 - 2720
Alignment:
| Q |
13 |
aatatactgcttcaaatctacacccttaacaaacttcagatttgagttctgcattaggttttatnnnnnnnnnnnntaattaaatgatgtgaacaaaatt |
112 |
Q |
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| T |
2191 |
aatatactgcttcaaatctacacccttaacaaacttcagatttgagttctgcattagcttttataaaaaataaaaataattaaatgatgtgaacaaaatt |
2290 |
T |
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| Q |
113 |
aaatcatgttttaatcctcgaattcccaaatataaattcttttataacctaaagttctggtctgaaataagtaaactcatatcaagatattacaacttag |
212 |
Q |
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| T |
2291 |
aaatcatgttttaatcctcgaattcccaaatatagattcttttataacctaaagttctggtctgaaataagtaaactcatatcaagatattacaacttag |
2390 |
T |
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| Q |
213 |
aatgaagaattaacaatgatagtacattgaccgattggagcttaaccaaaagcttagaacattaagacataaacaattccatacagaagaaaaatgtgag |
312 |
Q |
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| T |
2391 |
aatgaagaattaacaatgatagtacattgaccgattggagcttaaccaaaagcttagaacattaagacataaacaattccatacagaagaaaaatgtgag |
2490 |
T |
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| Q |
313 |
aaacggaagaaaaagaatctcttttttattgtaattagcaatagcaaaaattatcataaaattatcatatgcattttctgaaaactactcttcagaatta |
412 |
Q |
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| T |
2491 |
aaacggaagaaaaagaacctcttttttattgtaattagcaatagcaaaaattatcataaaattatcatatgcattttctgaaaactactcttcagaatta |
2590 |
T |
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| Q |
413 |
gtaaatgtagtgttggatgaatcataagattgtgagtgtgtggaattagtatgagataagtaacaaaaatcattttcgttcgacgagatcattttattct |
512 |
Q |
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| T |
2591 |
gtaaatgtagtgttggatgaatcataagattgtgagtgtgtggaattagtatgagataagtaacaaaaatcattttcgttcgacgagatcattttgttct |
2690 |
T |
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| Q |
513 |
ggtgtgtaagcaagatgttgctgtaagcaa |
542 |
Q |
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| T |
2691 |
ggtgtgtaagcaagatgttgctgtaagcaa |
2720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0526; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 3732 - 3780
Alignment:
| Q |
27 |
aatctacacccttaacaaacttcagatttgagttctgcattaggtttta |
75 |
Q |
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| T |
3732 |
aatctatacccttcacaaacttcagatttgcattctgcatcaggtttta |
3780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 18863162 - 18863069
Alignment:
| Q |
120 |
gttttaatcctcgaattcccaaatataaattcttttataacctaaagttctggtctgaaataagtaaactcatatcaagatattacaacttagaa |
214 |
Q |
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| T |
18863162 |
gttttaatcttcaaattcctaaatatagatt-tttgataagctaaagttctggtccgaaataagtaaaatcatatcaagatattacaacttagaa |
18863069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 18858409 - 18858332
Alignment:
| Q |
266 |
ttagaacattaagacataaacaattccatacagaagaaaaatgtgagaaacggaagaaaaagaatctcttttttattgta |
345 |
Q |
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| T |
18858409 |
ttagaacattcatatataaacaattccatacagaagaaaaatgtgag--acaaaagaaaaacaacctctttgttattgta |
18858332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 18863282 - 18863230
Alignment:
| Q |
21 |
gcttcaaatctacacccttaacaaacttcagatttgagttctgcattaggttt |
73 |
Q |
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| T |
18863282 |
gcttcgaatctacaccctcgacaaacttcagatttgcgttctgcattaggttt |
18863230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 18859327 - 18859294
Alignment:
| Q |
41 |
acaaacttcagatttgagttctgcattaggtttt |
74 |
Q |
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| T |
18859327 |
acaaacttcagatttgcgttctgcattaggtttt |
18859294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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