View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_low_50 (Length: 237)
Name: NF3164_low_50
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_50 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 54479790 - 54479571
Alignment:
| Q |
18 |
cattgcttgtatagaggagattaaacaagtacgtattgtttttggtgaatatagaggagattatacatttgcatgtataagacgaagtatgaacgaaata |
117 |
Q |
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| T |
54479790 |
cattgcttgtatagaggagattaaacaagtacgtattgtttttggtgaatatagaggagattatacatttgcatgtataagacaaagtatgaacgaaata |
54479691 |
T |
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| Q |
118 |
agaaaataaatggcaacaaaccttaagactaatataaaatataatagatgatatgcatgaaatgagtcagtgatcaagcatcataatcaaagggtccagt |
217 |
Q |
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| T |
54479690 |
agaaaataaatggcaacaaaccttaagactaatataaaatataatagatgatatgcatgaaatgagtcagtgatcaagcatcataatcaaagggtccagt |
54479591 |
T |
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| Q |
218 |
atcaaagggtctgggatgat |
237 |
Q |
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| T |
54479590 |
atcaaagggtctgggatgat |
54479571 |
T |
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