View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3164_low_51 (Length: 236)

Name: NF3164_low_51
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3164_low_51
NF3164_low_51
[»] chr6 (1 HSPs)
chr6 (1-222)||(4837664-4837881)
[»] chr3 (3 HSPs)
chr3 (145-211)||(38216347-38216412)
chr3 (145-210)||(39450619-39450683)
chr3 (145-213)||(25189660-25189727)
[»] scaffold0062 (2 HSPs)
scaffold0062 (145-211)||(20222-20287)
scaffold0062 (145-211)||(30390-30455)
[»] chr4 (3 HSPs)
chr4 (145-210)||(18879354-18879418)
chr4 (145-211)||(44363388-44363453)
chr4 (145-220)||(6216197-6216270)
[»] chr5 (2 HSPs)
chr5 (145-211)||(13639630-13639695)
chr5 (149-210)||(3577791-3577851)
[»] chr8 (1 HSPs)
chr8 (145-196)||(36632914-36632963)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4837664 - 4837881
Alignment:
Q  1 tgtaatttatattcttaatgcttgttttgcatgtaatttatcttatttaaatttgtgtcaatcaagggactaaagtttcttgttggattgatggaacaca 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  4837664 tgtaatttattttcttaatgcttgttttgcatgtaatttatcttatttaaatttgtctcaatcaagtgactaaagtttcttgttggattgatggaacaca 4837763  T
Q  101 ccatttccttcttgtatttgctacggtggtnnnnnnnnnnnnggttaattgcagttttagtcccctttattttcaccattttgcataattgatcccctta 200  Q
    ||||||||||||||||||||||||||||||            | ||||||| |||||||||||||||||||||||| ||||||| ||||||||||| |||    
T  4837764 ccatttccttcttgtatttgctacggtggt----aaaaaaaagtttaattgtagttttagtcccctttattttcactattttgcttaattgatcccttta 4837859  T
Q  201 tttttaaattcaatggttttag 222  Q
    |||| |||||||| ||||||||    
T  4837860 ttttcaaattcaacggttttag 4837881  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 38216412 - 38216347
Alignment:
Q  145 ttaattgcagttttagtcccctttattttcaccattttgcataattgatccccttatttttaaattc 211  Q
    |||||||||||||| |||||| | ||||||||||||||||||||||| ||||| |||||| ||||||    
T  38216412 ttaattgcagttttggtccccct-attttcaccattttgcataattggtccccctattttaaaattc 38216347  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 39450619 - 39450683
Alignment:
Q  145 ttaattgcagttttagtcccctttattttcaccattttgcataattgatccccttatttttaaatt 210  Q
    |||||||||||||| |||||| | ||||||||||||||||| ||||| ||||| |||||| |||||    
T  39450619 ttaattgcagtttttgtccccct-attttcaccattttgcagaattggtccccctattttaaaatt 39450683  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 25189727 - 25189660
Alignment:
Q  145 ttaattgcagttttagtcccctttattttcaccattttgcataattgatccccttatttttaaattcaa 213  Q
    |||||||||||||| |||||| | ||||| ||||||||||| ||||| ||||| |||||| ||||||||    
T  25189727 ttaattgcagttttggtccccct-atttttaccattttgcagaattggtccccctattttaaaattcaa 25189660  T

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Target: scaffold0062 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 20222 - 20287
Alignment:
Q  145 ttaattgcagttttagtcccctttattttcaccattttgcataattgatccccttatttttaaattc 211  Q
    ||||||||| |||||||||| |||||| | | ||||||||| |||||||| ||||||||||||||||    
T  20222 ttaattgcacttttagtccc-tttattattagcattttgcaaaattgatctccttatttttaaattc 20287  T

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Target: scaffold0062; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 30390 - 30455
Alignment:
Q  145 ttaattgcagttttagtcccctttattttcaccattttgcataattgatccccttatttttaaattc 211  Q
    ||||||||| |||||||||| |||||| | | ||||||||| |||||||| ||||||||||||||||    
T  30390 ttaattgcacttttagtccc-tttattattagcattttgcaaaattgatctccttatttttaaattc 30455  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 18879418 - 18879354
Alignment:
Q  145 ttaattgcagttttagtcccctttattttcaccattttgcataattgatccccttatttttaaatt 210  Q
    ||||||||| |||| |||||| | ||||||||||||||||||||||||||||| || ||| |||||    
T  18879418 ttaattgcaattttggtccccct-attttcaccattttgcataattgatccccctaatttaaaatt 18879354  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 44363453 - 44363388
Alignment:
Q  145 ttaattgcagttttagtcccctttattttcaccattttgcataattgatccccttatttttaaattc 211  Q
    |||||||||||||| |||||| ||||||||| ||||||||  ||||| ||||| |||||| ||||||    
T  44363453 ttaattgcagttttggtcccc-ttattttcatcattttgcgaaattggtccccctattttaaaattc 44363388  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 6216197 - 6216270
Alignment:
Q  145 ttaattgcagttttagtcccctttattttcaccattttgcataattgatccccttatttttaaattcaatggtttt 220  Q
    ||||||||| |||| |||||||  |||||||||| |||||| ||||| ||||| |||||| |||||| || |||||    
T  6216197 ttaattgcaattttggtcccct--attttcaccactttgcagaattggtccccctattttaaaattcgatagtttt 6216270  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 13639695 - 13639630
Alignment:
Q  145 ttaattgcagttttagtcccctttattttcaccattttgcataattgatccccttatttttaaattc 211  Q
    |||||| ||||||| ||||| |||||||||| ||||||||| ||||| ||||| |||||| ||||||    
T  13639695 ttaattacagttttggtccc-tttattttcatcattttgcaaaattggtccccctattttaaaattc 13639630  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 3577851 - 3577791
Alignment:
Q  149 ttgcagttttagtcccctttattttcaccattttgcataattgatccccttatttttaaatt 210  Q
    |||||||||||||||| | |||||||||||||||| | ||||| ||||| |||||| |||||    
T  3577851 ttgcagttttagtccc-tctattttcaccattttgaagaattggtccccctattttaaaatt 3577791  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 36632963 - 36632914
Alignment:
Q  145 ttaattgcagttttagtcccctttattttcaccattttgcataattgatccc 196  Q
    |||||||||||||||||||||  |||||| |||||| |||| ||||||||||    
T  36632963 ttaattgcagttttagtcccc--tatttttaccattctgcagaattgatccc 36632914  T

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