View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3164_low_56 (Length: 216)

Name: NF3164_low_56
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3164_low_56
NF3164_low_56
[»] chr2 (23 HSPs)
chr2 (1-216)||(39788546-39788760)
chr2 (136-216)||(6177774-6177854)
chr2 (139-216)||(41643874-41643951)
chr2 (141-216)||(18947567-18947642)
chr2 (151-216)||(18779370-18779435)
chr2 (136-216)||(19073356-19073437)
chr2 (137-174)||(22963400-22963437)
chr2 (137-174)||(22998040-22998077)
chr2 (134-182)||(19424786-19424834)
chr2 (136-182)||(19093412-19093458)
chr2 (137-182)||(19313852-19313897)
chr2 (137-182)||(41465509-41465554)
chr2 (138-182)||(13711465-13711509)
chr2 (135-182)||(5881532-5881579)
chr2 (135-172)||(11366549-11366586)
chr2 (137-174)||(26357577-26357614)
chr2 (137-182)||(33551144-33551189)
chr2 (139-180)||(36641988-36642029)
chr2 (135-172)||(43446475-43446512)
chr2 (134-182)||(17054254-17054302)
chr2 (134-182)||(17071895-17071943)
chr2 (149-213)||(27138992-27139056)
chr2 (136-216)||(34441890-34441970)
[»] chr3 (25 HSPs)
chr3 (136-216)||(40640603-40640683)
chr3 (138-216)||(32180716-32180794)
chr3 (135-216)||(45879467-45879548)
chr3 (140-216)||(38392597-38392673)
chr3 (137-216)||(49359597-49359676)
chr3 (138-216)||(19606883-19606961)
chr3 (137-216)||(47930635-47930714)
chr3 (135-172)||(3655352-3655389)
chr3 (151-216)||(7568688-7568753)
chr3 (136-185)||(22450958-22451007)
chr3 (135-182)||(7327623-7327670)
chr3 (138-173)||(14586795-14586830)
chr3 (135-182)||(26941400-26941447)
chr3 (139-182)||(53818512-53818555)
chr3 (134-216)||(18272193-18272274)
chr3 (136-182)||(21193596-21193642)
chr3 (136-182)||(35844316-35844362)
chr3 (136-174)||(53175713-53175751)
chr3 (137-174)||(4015451-4015488)
chr3 (137-182)||(20373436-20373481)
chr3 (135-172)||(40552409-40552446)
chr3 (139-172)||(43976035-43976068)
chr3 (137-182)||(51213121-51213166)
chr3 (136-172)||(21009955-21009991)
chr3 (138-182)||(29163839-29163883)
[»] chr5 (16 HSPs)
chr5 (135-216)||(36055843-36055924)
chr5 (138-216)||(10237415-10237493)
chr5 (139-216)||(41417548-41417625)
chr5 (136-205)||(22616493-22616562)
chr5 (135-182)||(13380493-13380540)
chr5 (138-216)||(21320752-21320830)
chr5 (135-182)||(39572817-39572864)
chr5 (136-182)||(8742017-8742063)
chr5 (137-185)||(14409453-14409501)
chr5 (135-182)||(9200231-9200278)
chr5 (136-182)||(5112443-5112489)
chr5 (136-182)||(19119858-19119904)
chr5 (137-182)||(7693230-7693275)
chr5 (135-172)||(12164929-12164966)
chr5 (138-182)||(22980794-22980838)
chr5 (136-172)||(24886101-24886137)
[»] chr4 (23 HSPs)
chr4 (139-216)||(2266825-2266902)
chr4 (136-216)||(2704511-2704591)
chr4 (140-213)||(17612338-17612411)
chr4 (137-182)||(55241270-55241315)
chr4 (138-182)||(4597994-4598038)
chr4 (137-185)||(28003149-28003197)
chr4 (136-182)||(32912746-32912792)
chr4 (136-182)||(34361657-34361703)
chr4 (134-172)||(37663915-37663953)
chr4 (136-182)||(38812263-38812309)
chr4 (136-185)||(32579443-32579492)
chr4 (136-185)||(38011853-38011902)
chr4 (138-216)||(51204580-51204662)
chr4 (139-216)||(20097456-20097537)
chr4 (139-182)||(27396618-27396661)
chr4 (139-174)||(34948271-34948306)
chr4 (139-182)||(52516599-52516642)
chr4 (136-182)||(4396325-4396371)
chr4 (136-182)||(35021201-35021247)
chr4 (139-208)||(33255501-33255570)
chr4 (137-182)||(38811813-38811858)
chr4 (137-182)||(39397918-39397963)
chr4 (136-172)||(25701233-25701269)
[»] chr6 (15 HSPs)
chr6 (136-216)||(19631748-19631828)
chr6 (135-182)||(7055354-7055401)
chr6 (138-185)||(20768087-20768134)
chr6 (136-182)||(8513232-8513278)
chr6 (134-182)||(3880078-3880126)
chr6 (139-187)||(6614034-6614082)
chr6 (136-216)||(26301892-26301972)
chr6 (139-182)||(30353497-30353540)
chr6 (136-182)||(4318962-4319008)
chr6 (136-182)||(5627390-5627436)
chr6 (134-216)||(30338473-30338555)
chr6 (137-182)||(24662193-24662238)
chr6 (136-172)||(1945832-1945868)
chr6 (137-185)||(7235170-7235218)
chr6 (136-216)||(11084121-11084201)
[»] chr7 (19 HSPs)
chr7 (137-216)||(23402340-23402419)
chr7 (146-216)||(22955281-22955351)
chr7 (153-216)||(37854263-37854326)
chr7 (138-185)||(48928701-48928748)
chr7 (137-182)||(5657622-5657667)
chr7 (137-182)||(6546494-6546539)
chr7 (139-182)||(25691686-25691729)
chr7 (151-216)||(7742933-7742998)
chr7 (138-182)||(24211717-24211761)
chr7 (136-172)||(30055500-30055536)
chr7 (137-216)||(4902340-4902419)
chr7 (136-179)||(26524471-26524514)
chr7 (137-216)||(8133528-8133609)
chr7 (136-182)||(17842727-17842773)
chr7 (136-182)||(18797303-18797349)
chr7 (137-174)||(8861260-8861297)
chr7 (137-182)||(37109847-37109892)
chr7 (136-213)||(40381939-40382016)
chr7 (136-168)||(9355981-9356013)
[»] scaffold0200 (1 HSPs)
scaffold0200 (134-216)||(24786-24868)
[»] chr1 (20 HSPs)
chr1 (134-216)||(13876888-13876970)
chr1 (153-216)||(16127536-16127599)
chr1 (136-182)||(32267029-32267075)
chr1 (137-187)||(43579242-43579292)
chr1 (135-216)||(16132473-16132554)
chr1 (137-185)||(31621685-31621733)
chr1 (138-185)||(14758038-14758085)
chr1 (136-182)||(1547282-1547328)
chr1 (174-216)||(10758269-10758311)
chr1 (137-182)||(23999343-23999388)
chr1 (136-184)||(4150488-4150536)
chr1 (135-182)||(18422645-18422692)
chr1 (136-182)||(11742485-11742531)
chr1 (136-182)||(16415640-16415686)
chr1 (139-185)||(33725732-33725778)
chr1 (136-182)||(37619031-37619077)
chr1 (135-172)||(30254418-30254455)
chr1 (135-172)||(30254852-30254889)
chr1 (137-174)||(38823210-38823247)
chr1 (137-182)||(47682628-47682673)
[»] chr8 (14 HSPs)
chr8 (136-216)||(4108881-4108961)
chr8 (135-182)||(1150251-1150298)
chr8 (136-182)||(1204925-1204971)
chr8 (138-184)||(3858849-3858895)
chr8 (137-182)||(15009241-15009286)
chr8 (135-174)||(7998360-7998399)
chr8 (135-182)||(27082984-27083031)
chr8 (135-182)||(30654729-30654776)
chr8 (136-174)||(39099263-39099301)
chr8 (137-182)||(4133154-4133199)
chr8 (137-182)||(5300092-5300137)
chr8 (139-184)||(6446707-6446752)
chr8 (137-182)||(13307622-13307667)
chr8 (137-185)||(33906223-33906271)
[»] scaffold0009 (1 HSPs)
scaffold0009 (135-182)||(42346-42393)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 39788760 - 39788546
Alignment:
Q  1 atttagtgagcaagaccattagtgtatggtaaaagtccatttattattgggtttttcaatttctacaaattaagaagttctaaatttgtatgcattttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39788760 atttagtgagcaagaccattagtgtatggtaaaagtccatttattattgggtttttcaatttctacaaattaagaagttctaaatttgtatgcattttat 39788661  T
Q  101 atttaatatataactttcacccgatnnnnnnnngtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattga 200  Q
    |||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  39788660 atttaatatataactttcacccgat-aaaaaaagtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatagtcaatcattga 39788562  T
Q  201 gcatttgtgtatttaa 216  Q
    ||||||||||||||||    
T  39788561 gcatttgtgtatttaa 39788546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 6177774 - 6177854
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||| || || |||||||| |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  6177774 aggaaaattctacggcgaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgagcatttgtgtatttaa 6177854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 41643874 - 41643951
Alignment:
Q  139 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    |||||| |||||||||||||| | |||||||||| | ||||||| |||||||| ||||||||||||||||||||||||    
T  41643874 aaaattctatggtgaagtcatgataatgacttttttggtgaagttaaatggtcaatcattgagcatttgtgtatttaa 41643951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 18947642 - 18947567
Alignment:
Q  141 aattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    |||| |||||||||||||| | ||| |||||||| ||||||| |||||||| |||||||| |||||||||||||||    
T  18947642 aattctatggtgaagtcatgaaaataacttttctggtgaagttaaatggtcaatcattgaacatttgtgtatttaa 18947567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 18779435 - 18779370
Alignment:
Q  151 tgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||||| |||||||||  |  |||||| |||||||| ||||||||||||||||||||||||    
T  18779435 tgaagtcataaaaatgactttattgatgaagttaaatggtcaatcattgagcatttgtgtatttaa 18779370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 19073356 - 19073437
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctag-tgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||| ||||||||||| || ||||||| |||| | | |||||| |||||||| ||||||||| ||||||||||||||    
T  19073356 aggaaaattctatggtgaagttatgagaatgattttttttggtgaagttaaatggtcaatcattgagaatttgtgtatttaa 19073437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 22963400 - 22963437
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttct 174  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22963400 ggaaaattttatggtgaagtcataagaatgacttttct 22963437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 22998077 - 22998040
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttct 174  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22998077 ggaaaattttatggtgaagtcataagaatgacttttct 22998040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 19424834 - 19424786
Alignment:
Q  134 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||||||||||||||||||||| |||||| ||||||| |||||||    
T  19424834 gtaggaaaattttatggtgaagtcatgagaatggcttttctggtgaagt 19424786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 19093412 - 19093458
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||||    
T  19093412 aggaaaattttatggtgaagtcatgagaatgatttttctggtgaagt 19093458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 19313852 - 19313897
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||    
T  19313852 ggaaaattctatggtgaagtcattagaatgacttttctggtgaagt 19313897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 41465509 - 41465554
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||    
T  41465509 ggaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 41465554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 13711465 - 13711509
Alignment:
Q  138 gaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||| |||||||||||||| |||||||||||||| |||||||    
T  13711465 gaaaattctatggtgaagtcatcagaatgacttttctggtgaagt 13711509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 5881532 - 5881579
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||||||||| |||||||||| | |||||||||||| |||||||    
T  5881532 taggaaaattttattgtgaagtcattaaaatgacttttctggtgaagt 5881579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 11366586 - 11366549
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgactttt 172  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  11366586 taggaaaattctatggtgaaatcataagaatgactttt 11366549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 26357577 - 26357614
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttct 174  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  26357577 ggaaaattttatggtgaagtcatgaaaatgacttttct 26357614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 33551189 - 33551144
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||| || ||||||||||| |||||||||||| |||||||||    
T  33551189 ggaaaattctacggtgaagtcatgagaatgacttttttagtgaagt 33551144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 36641988 - 36642029
Alignment:
Q  139 aaaattttatggtgaagtcataagaatgacttttctagtgaa 180  Q
    |||||| |||||||||||||| |||||||||||||| |||||    
T  36641988 aaaattctatggtgaagtcatgagaatgacttttctggtgaa 36642029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 43446512 - 43446475
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgactttt 172  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  43446512 taggaaaattctatggtgaagtcatgagaatgactttt 43446475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 17054302 - 17054254
Alignment:
Q  134 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||||| ||||||||||||||  ||||||||||| | |||||||    
T  17054302 gtaggaaaattctatggtgaagtcatgcgaatgacttttttggtgaagt 17054254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 17071943 - 17071895
Alignment:
Q  134 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||||| ||||||||||||||  ||||||||||| | |||||||    
T  17071943 gtaggaaaattctatggtgaagtcatgcgaatgacttttttggtgaagt 17071895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 27139056 - 27138992
Alignment:
Q  149 ggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatt 213  Q
    ||||||||||| | |||||||||| |  |||||| |||||| | |||||||| ||||||||||||    
T  27139056 ggtgaagtcatgaaaatgacttttttgatgaagttaaatggccaatcattgatcatttgtgtatt 27138992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 34441970 - 34441890
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||| |||||||||||||| | |||||||||| | || |||| |||||  | || |||||  ||||||||||||||    
T  34441970 aggaaaattctatggtgaagtcatgaaaatgacttttttggtaaagttaaatgaccaattattgaatatttgtgtatttaa 34441890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 40640683 - 40640603
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  40640683 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgagcatttgtgtatttaa 40640603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 32180794 - 32180716
Alignment:
Q  138 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||| || |||||||| || |||||||||||||||||||||| |||||||  ||||||||||||||||||||||||    
T  32180794 gaaaattgtacggtgaagttatgagaatgacttttctagtgaagttaaatggttaatcattgagcatttgtgtatttaa 32180716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 45879548 - 45879467
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    |||||||||| |||| ||||||||| |||||||||||||| || |||| |||||| | ||||||||||||||||||||||||    
T  45879548 taggaaaattctatgctgaagtcatgagaatgacttttctggtaaagttaaatggccaatcattgagcatttgtgtatttaa 45879467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 38392673 - 38392597
Alignment:
Q  140 aaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||| |||||||||||||| |||||||||||| | ||||||| ||||||||  ||||||| |||||||||||||||    
T  38392673 aaattatatggtgaagtcatgagaatgacttttttggtgaagttaaatggtcagtcattgaacatttgtgtatttaa 38392597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 49359676 - 49359597
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    |||||||| |||||||||||||| | |||||||||| | ||||||| |||||| | |||||||| |||||||||||||||    
T  49359676 ggaaaattctatggtgaagtcatgaaaatgactttttttgtgaagttaaatggccaatcattgaacatttgtgtatttaa 49359597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 19606961 - 19606883
Alignment:
Q  138 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||| ||||||||||| |||| |||||||||||| ||||||| |||||  | || |||||||||||||||||||||    
T  19606961 gaaaattctatggtgaagttataaaaatgacttttctggtgaagttaaatgaccaatgattgagcatttgtgtatttaa 19606883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 47930714 - 47930635
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    |||||||| |||||||||||||| | ||||| |||||| ||||||| |||||  | |||||||| |||||||||||||||    
T  47930714 ggaaaattctatggtgaagtcatgaaaatgatttttctggtgaagttaaatgaccaatcattgaacatttgtgtatttaa 47930635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 3655389 - 3655352
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgactttt 172  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  3655389 taggaaaattttatggtgaagtcataaaaatgactttt 3655352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 7568753 - 7568688
Alignment:
Q  151 tgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||| | ||| |||||| | ||||||| |||||||  ||||||||||||||||||||||||    
T  7568753 tgaagtcatgaaaattacttttttggtgaagttaaatggtaaatcattgagcatttgtgtatttaa 7568688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 22450958 - 22451007
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 185  Q
    ||||||||| |||||||||||||| ||||||| |||||| ||||||||||    
T  22450958 aggaaaattctatggtgaagtcatgagaatgatttttctggtgaagtcaa 22451007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 7327670 - 7327623
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||||| ||||||||||| || |||||||||||| |||||||||    
T  7327670 taggaaaattctatggtgaagttatgagaatgacttttttagtgaagt 7327623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 173
Target Start/End: Complemental strand, 14586830 - 14586795
Alignment:
Q  138 gaaaattttatggtgaagtcataagaatgacttttc 173  Q
    |||||||||||||||||||||| |||||||||||||    
T  14586830 gaaaattttatggtgaagtcattagaatgacttttc 14586795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 26941447 - 26941400
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||||| |||||||||||||||||||||| |||| | |||||||    
T  26941447 taggaaaattctatggtgaagtcataagaatgatttttttggtgaagt 26941400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 53818555 - 53818512
Alignment:
Q  139 aaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||    
T  53818555 aaaattttatggtgaagtcatgagaatgatttttctggtgaagt 53818512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 18272274 - 18272193
Alignment:
Q  134 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||||| || ||||||||||| ||||||||||||||| ||| || || |   | |||||||| |||||||||||||||    
T  18272274 gtaggaaaattatacggtgaagtcatgagaatgacttttctaatgacgttaact-cccaatcattgaacatttgtgtatttaa 18272193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 21193596 - 21193642
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| |||||| ||||||| |||||||||||||| |||||||    
T  21193596 aggaaaattctatggtaaagtcatgagaatgacttttctggtgaagt 21193642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 35844316 - 35844362
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| |||||||||||||| | |||||||||||| |||||||    
T  35844316 aggaaaattctatggtgaagtcatgataatgacttttctggtgaagt 35844362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 53175713 - 53175751
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttct 174  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  53175713 aggaaaattttatggtgaagttatgagaatgacttttct 53175751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 4015451 - 4015488
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttct 174  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  4015451 ggaaaattctatggtgaagtcatgagaatgacttttct 4015488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 20373481 - 20373436
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||||||| |||||||||||||||||| |||| | |||||||    
T  20373481 ggaaaattttatagtgaagtcataagaatgatttttttggtgaagt 20373436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 40552446 - 40552409
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgactttt 172  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  40552446 taggaaaattctatggtgaagtcatgagaatgactttt 40552409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 43976068 - 43976035
Alignment:
Q  139 aaaattttatggtgaagtcataagaatgactttt 172  Q
    ||||||||||||||||||||| ||||||||||||    
T  43976068 aaaattttatggtgaagtcatgagaatgactttt 43976035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 51213166 - 51213121
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||| |||||||||||||| |||||||||||| | |||||||    
T  51213166 ggaaaattctatggtgaagtcatgagaatgacttttttggtgaagt 51213121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 21009991 - 21009955
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgactttt 172  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  21009991 aggaaaattttatggtgaagttataagaatgattttt 21009955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 29163839 - 29163883
Alignment:
Q  138 gaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||||||||||||||||| | ||||| |||||| |||||||    
T  29163839 gaaaattttatggtgaagtcattaaaatgatttttctggtgaagt 29163883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 36055924 - 36055843
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||    
T  36055924 taggaaaattttatggtgatgtcatgagaatgacttttcttgtgaagttaaatggtcaatcattgagcatttgtgaatttaa 36055843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 10237415 - 10237493
Alignment:
Q  138 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||| ||| |||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  10237415 gaaaattctattgtgaagtcatgaaaatgacttttctagtgaagttaaatggtcaatcattgagcatttgtgtatttaa 10237493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 41417625 - 41417548
Alignment:
Q  139 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    |||||| ||||||||| || ||||||||| |||||||||||||| |||||||  |||||||| |||||||||||||||    
T  41417625 aaaattatatggtgaaatcgtaagaatgatttttctagtgaagttaaatggttaatcattgaacatttgtgtatttaa 41417548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 22616493 - 22616562
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatt 205  Q
    ||||||||| |||||||||||||| | |||||||||||| ||||||| |||||| | |||||||||||||    
T  22616493 aggaaaattctatggtgaagtcatgaaaatgacttttctggtgaagttaaatggccaatcattgagcatt 22616562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 13380493 - 13380540
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  13380493 taggcaaattttatggtgaagtcatgagaatgacttttctagtgaagt 13380540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 21320752 - 21320830
Alignment:
Q  138 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||| ||||||||||| |||| |||||||||| |  |||||| ||||| || ||||||||||||| ||||||||||    
T  21320752 gaaaattctatggtgaagtaataaaaatgacttttttgatgaagttaaatgatcaatcattgagcattcgtgtatttaa 21320830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 39572817 - 39572864
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  39572817 taggaaaattctatggtgaagtcatgagaatgacttttctagttaagt 39572864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 8742063 - 8742017
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||    
T  8742063 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 8742017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 14409501 - 14409453
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 185  Q
    |||||||| |||||||||||||| ||||||| |||||| ||||||||||    
T  14409501 ggaaaattctatggtgaagtcatgagaatgatttttctggtgaagtcaa 14409453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 9200231 - 9200278
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||||||||||||||||||| | ||| |||||||| |||||||    
T  9200231 taggaaaattttatggtgaagtcattaaaataacttttctggtgaagt 9200278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 5112489 - 5112443
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||||||||||||||||||| | |||||||||| | |||||||    
T  5112489 aggaaaattttatggtgaagtcatgaaaatgacttttttggtgaagt 5112443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 19119858 - 19119904
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| |||||||||||||| |||||||||||| | |||||||    
T  19119858 aggaaaattctatggtgaagtcatgagaatgacttttgtggtgaagt 19119904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 7693230 - 7693275
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||| |||||||||||||| | |||||||||||| |||||||    
T  7693230 ggaaaattctatggtgaagtcattaaaatgacttttctggtgaagt 7693275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 12164966 - 12164929
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgactttt 172  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  12164966 taggaaaattttacggtgaagtcatgagaatgactttt 12164929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 22980794 - 22980838
Alignment:
Q  138 gaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||||||| |||||| || |||||||||||||| |||||||    
T  22980794 gaaaattttatgatgaagttatgagaatgacttttctggtgaagt 22980838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 24886101 - 24886137
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgactttt 172  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  24886101 aggaaaattttatggtgaaatcatgagaatgactttt 24886137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 2266902 - 2266825
Alignment:
Q  139 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    |||||| |||||||||||||| | |||||||||||||||||||| |||| ||| ||||||||||||||||||||||||    
T  2266902 aaaattatatggtgaagtcatgataatgacttttctagtgaagttaaatcgtcaatcattgagcatttgtgtatttaa 2266825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 2704511 - 2704591
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    |||||||||||||||||||||||| | |||||||||||| ||||||| ||||| || ||||||||  ||||||||||||||    
T  2704511 aggaaaattttatggtgaagtcatgaaaatgacttttctggtgaagttaaatgatcaatcattgaatatttgtgtatttaa 2704591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 17612338 - 17612411
Alignment:
Q  140 aaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatt 213  Q
    ||||| |||||||||||||| ||||||| |||| || |||||| |||||||| |||||| ||||||||||||||    
T  17612338 aaattctatggtgaagtcatgagaatgatttttttaatgaagttaaatggtcaatcattaagcatttgtgtatt 17612411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 55241315 - 55241270
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  55241315 ggaaaattctatggtgaagtcatgagaatgacttttctagtgaagt 55241270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 4597994 - 4598038
Alignment:
Q  138 gaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  4597994 gaaaattttatggtgaagtcattagaatgacttttctggtgaagt 4598038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 28003197 - 28003149
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 185  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  28003197 ggaaaattctatggtgaagtcatgagaatgacttttctggtgaagtcaa 28003149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 32912792 - 32912746
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| ||||||||||||||||||||||||||| | |||||||    
T  32912792 aggaaaattctatggtgaagtcataagaatgacttttttggtgaagt 32912746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 34361703 - 34361657
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| ||||||||||||||||||||||||||| | |||||||    
T  34361703 aggaaaattctatggtgaagtcataagaatgacttttttggtgaagt 34361657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 37663953 - 37663915
Alignment:
Q  134 gtaggaaaattttatggtgaagtcataagaatgactttt 172  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  37663953 gtaggaaaattctatggtgaagtcataagaatgactttt 37663915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 38812309 - 38812263
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||    
T  38812309 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 38812263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 32579443 - 32579492
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 185  Q
    |||||||||||||||||||||  | |||||||||||||| ||||||||||    
T  32579443 aggaaaattttatggtgaagttctgagaatgacttttctggtgaagtcaa 32579492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 38011853 - 38011902
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 185  Q
    ||||||||| ||||||||| |||| |||||||||||||| ||||||||||    
T  38011853 aggaaaattctatggtgaaatcatgagaatgacttttctggtgaagtcaa 38011902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 51204580 - 51204662
Alignment:
Q  138 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa----atggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||| |||||||||||||||| |||||||||||| ||||||| ||    ||| || || ||||||| |||||||||||||    
T  51204580 gaaaattctatggtgaagtcataaaaatgacttttctggtgaagttaaccctatgatcaattattgagcttttgtgtatttaa 51204662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 20097537 - 20097456
Alignment:
Q  139 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa----atggtcgatcattgagcatttgtgtatttaa 216  Q
    |||||| |||||||||||||| |||||||||||||| ||||||| ||    ||| || ||||||  ||||||||||||||||    
T  20097537 aaaattctatggtgaagtcatgagaatgacttttctggtgaagttaaccctatgatcaatcattccgcatttgtgtatttaa 20097456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 27396618 - 27396661
Alignment:
Q  139 aaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||| |||||||||||||| |||||||||||||| |||||||    
T  27396618 aaaattctatggtgaagtcatgagaatgacttttctggtgaagt 27396661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 34948306 - 34948271
Alignment:
Q  139 aaaattttatggtgaagtcataagaatgacttttct 174  Q
    ||||||||||||||||||||| ||||||||||||||    
T  34948306 aaaattttatggtgaagtcatgagaatgacttttct 34948271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 52516599 - 52516642
Alignment:
Q  139 aaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||||||||||||||| |||||||||||| | |||||||    
T  52516599 aaaattttatggtgaagtcatgagaatgacttttatggtgaagt 52516642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 4396325 - 4396371
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| ||| |||||||||||| |||||||||| |||||||||    
T  4396325 aggaaaattctatagtgaagtcataaaaatgacttttttagtgaagt 4396371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 35021247 - 35021201
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| |||||||||||||| | |||||||||||| |||||||    
T  35021247 aggaaaattctatggtgaagtcatgaaaatgacttttctggtgaagt 35021201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 33255501 - 33255570
Alignment:
Q  139 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgt 208  Q
    |||||| |||||||||||||  ||||| |||||| | ||||||| |||||| | || |||||||||||||    
T  33255501 aaaattatatggtgaagtcacgagaatcacttttttggtgaagttaaatggccaattattgagcatttgt 33255570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 38811813 - 38811858
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||| |||||||||||||| ||||||| |||||| |||||||    
T  38811813 ggaaaattctatggtgaagtcatgagaatgatttttctggtgaagt 38811858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 39397918 - 39397963
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||| |||||||||||||| |||||||||||| | |||||||    
T  39397918 ggaaaattctatggtgaagtcattagaatgacttttatggtgaagt 39397963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 25701269 - 25701233
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgactttt 172  Q
    |||||||||||||||||||||||| | ||||||||||    
T  25701269 aggaaaattttatggtgaagtcatgataatgactttt 25701233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 19631748 - 19631828
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||  | |||||||| |||||||||||||||    
T  19631748 aggaaaattctatggtgaagtcataagaatgacttttctggtgaagttaaatgaccaatcattgaacatttgtgtatttaa 19631828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 7055401 - 7055354
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||||||||||||||||||||||||||| |||| | |||||||    
T  7055401 taggaaaattttatggtgaagtcataagaatgatttttttggtgaagt 7055354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 20768087 - 20768134
Alignment:
Q  138 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 185  Q
    ||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  20768087 gaaaattctatggtgaagtcatgagaatgacttttctggtgaagtcaa 20768134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 8513232 - 8513278
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||    
T  8513232 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 8513278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 3880126 - 3880078
Alignment:
Q  134 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||||| |||||||||||||  |||||||||||||| |||||||    
T  3880126 gtaggaaaattctatggtgaagtcacgagaatgacttttctggtgaagt 3880078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 6614082 - 6614034
Alignment:
Q  139 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaat 187  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||| ||||    
T  6614082 aaaattatatggtgaaatcataagaatgacttttctggtgaagttaaat 6614034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 26301972 - 26301892
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||| |||||||||||||||| ||||| |||| | ||||||| |||||  | ||||||||  |||| |||||||||    
T  26301972 aggaaaattatatggtgaagtcataaaaatgatttttttcgtgaagttaaatgaccaatcattgaatatttatgtatttaa 26301892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 30353540 - 30353497
Alignment:
Q  139 aaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||| |||||||||||||| |||||||||||||| |||||||    
T  30353540 aaaattctatggtgaagtcatgagaatgacttttctggtgaagt 30353497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 4319008 - 4318962
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| |||||||||||||| |||||||||||| | |||||||    
T  4319008 aggaaaattctatggtgaagtcatgagaatgacttttttggtgaagt 4318962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 5627390 - 5627436
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| || |||||||||||||||||||||||| | |||||||    
T  5627390 aggaaaattctaaggtgaagtcataagaatgacttttttggtgaagt 5627436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 30338473 - 30338555
Alignment:
Q  134 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    |||| |||||| |||| ||||||  | |||||||||||| ||||||||| ||||| |  |||||||||||||| || ||||||    
T  30338473 gtagaaaaattctatgatgaagttgtgagaatgacttttttagtgaagttaaatgattaatcattgagcatttatgcatttaa 30338555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 24662238 - 24662193
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||| |||||| ||||||| | ||||||||||||||||||||    
T  24662238 ggaaaattctatggtaaagtcatgataatgacttttctagtgaagt 24662193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 1945832 - 1945868
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgactttt 172  Q
    ||||||||| || ||||||||||||||||||||||||    
T  1945832 aggaaaattctacggtgaagtcataagaatgactttt 1945868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 7235218 - 7235170
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 185  Q
    |||||||| ||||||||||| || |||||||||||||  ||||||||||    
T  7235218 ggaaaattctatggtgaagttatgagaatgacttttccggtgaagtcaa 7235170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 11084201 - 11084121
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||| |||||||||||||| | ||| |||||||| || |||| |||||  | ||||||||  |||| |||||||||    
T  11084201 aggaaaattctatggtgaagtcatgaaaataacttttctggtaaagttaaatgaccaatcattgaatatttatgtatttaa 11084121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 23402419 - 23402340
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    |||||||| ||||| |||||||| |||||||||||||| ||||||| |||||||| |||||||| ||| |||||||||||    
T  23402419 ggaaaattctatggcgaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgaacatctgtgtatttaa 23402340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 22955351 - 22955281
Alignment:
Q  146 tatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||||| || |||||||||||||| ||||||| |||||||| || ||||| |||||||||||||||    
T  22955351 tatggtgaagtaatgagaatgacttttctggtgaagttaaatggtcaattattgaacatttgtgtatttaa 22955281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 37854326 - 37854263
Alignment:
Q  153 aagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||| |||||||||||||| ||||| | |||||||| || |||||||||||||||||||||    
T  37854326 aagtcatgagaatgacttttctggtgaaattaaatggtcaattattgagcatttgtgtatttaa 37854263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 48928748 - 48928701
Alignment:
Q  138 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 185  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||    
T  48928748 gaaaattttatggtgaagtcatgagaatgacttttctggtgaagtcaa 48928701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 5657667 - 5657622
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||    
T  5657667 ggaaaattctatggtgaagtcatgagaatgacttttctagtgaagt 5657622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 6546494 - 6546539
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||    
T  6546494 ggaaaattctatggtgaagtcataagaatgatttttctagtgaagt 6546539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 25691729 - 25691686
Alignment:
Q  139 aaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||||||||||||||| |||||||||||||| |||||||    
T  25691729 aaaattttatggtgaagtcatgagaatgacttttctcgtgaagt 25691686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 7742933 - 7742998
Alignment:
Q  151 tgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||||| |||||||||| |  |||||| ||||| || ||||||||| ||||||||||||||    
T  7742933 tgaagtcataaaaatgacttttttgatgaagtaaaatgatcaatcattgagtatttgtgtatttaa 7742998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 24211717 - 24211761
Alignment:
Q  138 gaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||| ||||||||||||||||||||||||||| | |||||||    
T  24211717 gaaaattctatggtgaagtcataagaatgacttttttggtgaagt 24211761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 30055500 - 30055536
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgactttt 172  Q
    ||||||||| |||||||||||||||||||||||||||    
T  30055500 aggaaaattctatggtgaagtcataagaatgactttt 30055536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 4902340 - 4902419
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||||||||||||||||| | ||| | |||| | ||||| | ||||| || || ||||||||||| |||||||||    
T  4902340 ggaaaattttatggtgaagtcatgaaaataatttttttggtgaatttaaatgatcaattattgagcatttatgtatttaa 4902419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 26524514 - 26524471
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtga 179  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||    
T  26524514 aggaaaattctatggtgaagtcatgagaatgacttttctggtga 26524471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 8133609 - 8133528
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt--caaatggtcgatcattgagcatttgtgtatttaa 216  Q
    |||||||| ||  |||||||||||||||| |||||| | |||||||   ||||| || |||||| |||||||||||||||||    
T  8133609 ggaaaattctactgtgaagtcataagaataacttttttggtgaagttaaaaatgatcaatcattaagcatttgtgtatttaa 8133528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 17842773 - 17842727
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| |||||||||||||||| |||||||||| | |||||||    
T  17842773 aggaaaattctatggtgaagtcataaaaatgacttttttggtgaagt 17842727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 18797303 - 18797349
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| |||||||||||||| |||||||||||| | |||||||    
T  18797303 aggaaaattctatggtgaagtcatgagaatgacttttttggtgaagt 18797349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 8861260 - 8861297
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttct 174  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  8861260 ggaaaattctatggtgaagtcatgagaatgacttttct 8861297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 37109847 - 37109892
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||| |||||||||||||||| |||||||||| | |||||||    
T  37109847 ggaaaattctatggtgaagtcataaaaatgacttttttggtgaagt 37109892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 40381939 - 40382016
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatt 213  Q
    ||||||||| || |||||||| || |||||||||||||| ||||||| ||||| |  |||||| || |||| ||||||    
T  40381939 aggaaaattctacggtgaagttatgagaatgacttttctggtgaagttaaatgattaatcattaagtatttatgtatt 40382016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 9356013 - 9355981
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgac 168  Q
    |||||||||||||||||||||||| ||||||||    
T  9356013 aggaaaattttatggtgaagtcatgagaatgac 9355981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 24868 - 24786
Alignment:
Q  134 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||||| |||||  |||| || ||||||| |||||| ||||| | |||||||| ||||||||||||||||||||||||    
T  24868 gtaggaaaattctatggcaaagttatgagaatgatttttctggtgaaattaaatggtcaatcattgagcatttgtgtatttaa 24786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 13876970 - 13876888
Alignment:
Q  134 gtaggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||||| ||||||||||| || | |||||||||| | ||||||| ||||| || ||||||||| ||||||||||||||    
T  13876970 gtaggaaaattctatggtgaagttatgaaaatgacttttatggtgaagttaaatgatcaatcattgagtatttgtgtatttaa 13876888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 16127536 - 16127599
Alignment:
Q  153 aagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||| | |||||||||||| ||||||| |||||||| |||||||| |||||||||||||||    
T  16127536 aagtcatgaaaatgacttttctggtgaagttaaatggtcaatcattgatcatttgtgtatttaa 16127599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 32267029 - 32267075
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||    
T  32267029 aggaaaattttatggtgaagtcataagaatgactttttttgtgaagt 32267075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 43579242 - 43579292
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaat 187  Q
    |||||||| |||||||||||||| |||||||||||||||||||||| ||||    
T  43579242 ggaaaattctatggtgaagtcatgagaatgacttttctagtgaagttaaat 43579292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 16132473 - 16132554
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    |||||||||| |||||||||||||  ||| |||||||| | ||||||| ||||||   || |||||||||||||||||||||    
T  16132473 taggaaaattctatggtgaagtcaatagattgacttttttggtgaagttaaatggcaaattattgagcatttgtgtatttaa 16132554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 31621733 - 31621685
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 185  Q
    |||||||| || ||||||||||| |||||||||||||||||||||||||    
T  31621733 ggaaaattctacggtgaagtcatgagaatgacttttctagtgaagtcaa 31621685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 14758038 - 14758085
Alignment:
Q  138 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 185  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  14758038 gaaaattttacggtgaagtcatgagaatgacttttctggtgaagtcaa 14758085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 1547282 - 1547328
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||    
T  1547282 aggaaaattctatggtgaagtcatgagaatgacttttctggtgaagt 1547328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 10758311 - 10758269
Alignment:
Q  174 tagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  10758311 tagtgaagttaaatggtcaatcattgagcatttgtgtatttaa 10758269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 23999343 - 23999388
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||||||||||||||||||||||||| |||| | |||||||    
T  23999343 ggaaaattttatggtgaagtcataagaatgatttttttggtgaagt 23999388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 4150536 - 4150488
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtca 184  Q
    ||||||||| |||||||||||||| | |||||||||||| |||||||||    
T  4150536 aggaaaattctatggtgaagtcatgataatgacttttctggtgaagtca 4150488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 18422645 - 18422692
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||||| |||||||||||||||| |||||||||| | |||||||    
T  18422645 taggaaaattctatggtgaagtcataaaaatgacttttttggtgaagt 18422692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 11742531 - 11742485
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||||||| ||||||| || |||||||||||||| |||||||    
T  11742531 aggaaaattttatcgtgaagttatgagaatgacttttctggtgaagt 11742485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 16415640 - 16415686
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| || ||||||||||| |||||||||||||| |||||||    
T  16415640 aggaaaattctaaggtgaagtcatgagaatgacttttctggtgaagt 16415686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 33725778 - 33725732
Alignment:
Q  139 aaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 185  Q
    |||||| |||||| ||||||  |||||||||||||||||||||||||    
T  33725778 aaaattctatggtaaagtcaagagaatgacttttctagtgaagtcaa 33725732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 37619077 - 37619031
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||| ||||||||||| ||||||||||||||| | |||||||    
T  37619077 aggaaaattctatggtgaagttataagaatgacttttttggtgaagt 37619031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 30254418 - 30254455
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgactttt 172  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  30254418 taggaaaattctatggtgaagttataagaatgactttt 30254455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 30254852 - 30254889
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgactttt 172  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  30254852 taggaaaattctatggtgaagtcataataatgactttt 30254889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 38823210 - 38823247
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttct 174  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  38823210 ggaaaattctatggtgaagtcatgagaatgacttttct 38823247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 47682673 - 47682628
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||||||||||||||||| ||| |||||||| | |||||||    
T  47682673 ggaaaattttatggtgaagtcatgagagtgacttttttggtgaagt 47682628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 4108961 - 4108881
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaaatggtcgatcattgagcatttgtgtatttaa 216  Q
    |||||||||||||||||||||||| | |||||||||| | || |||| |||||  | ||||||||  ||||||||||||||    
T  4108961 aggaaaattttatggtgaagtcatgaaaatgacttttttggtaaagttaaatgaccaatcattgaatatttgtgtatttaa 4108881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 1150298 - 1150251
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||||| ||||||||||||||||||||||||||| | |||||||    
T  1150298 taggaaaattctatggtgaagtcataagaatgacttttttggtgaagt 1150251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 1204925 - 1204971
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||||||| ||||||||||| |||||||||||||| |||||||    
T  1204925 aggaaaattttacggtgaagtcatgagaatgacttttctggtgaagt 1204971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 3858849 - 3858895
Alignment:
Q  138 gaaaattttatggtgaagtcataagaatgacttttctagtgaagtca 184  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||    
T  3858849 gaaaattttatggtgaaataatacgaatgacttttctagtgaagtca 3858895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 15009241 - 15009286
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||| ||||||||||||||||||||||||||| | |||||||    
T  15009241 ggaaaattctatggtgaagtcataagaatgacttttttggtgaagt 15009286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 174
Target Start/End: Original strand, 7998360 - 7998399
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgacttttct 174  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  7998360 taggaaaattctatggtgaagtcatgagaatgacttttct 7998399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 27083031 - 27082984
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||||| |||||||||||||| ||| |||||||||| |||||||    
T  27083031 taggaaaattctatggtgaagtcatcagactgacttttctggtgaagt 27082984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 30654776 - 30654729
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||||||||||||||||||||||| ||| |||| | |||||||    
T  30654776 taggaaaattttatggtgaagtcataagagtgatttttttggtgaagt 30654729  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 39099301 - 39099263
Alignment:
Q  136 aggaaaattttatggtgaagtcataagaatgacttttct 174  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  39099301 aggaaaattctatggtgaagtcatgagaatgacttttct 39099263  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 4133199 - 4133154
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||||||||| ||||||| |||||||||||| | |||||||    
T  4133199 ggaaaattttatggtcaagtcatcagaatgacttttttggtgaagt 4133154  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 5300137 - 5300092
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||| |||||||||||||| |||||||||||| || ||||||    
T  5300137 ggaaaattctatggtgaagtcatgagaatgacttttttaatgaagt 5300092  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 6446752 - 6446707
Alignment:
Q  139 aaaattttatggtgaagtcataagaatgacttttctagtgaagtca 184  Q
    |||||| |||||||||||||| | |||||||||||| |||||||||    
T  6446752 aaaattctatggtgaagtcatgataatgacttttctggtgaagtca 6446707  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 13307622 - 13307667
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    |||||||| |||||||||||||| ||||||| |||||| |||||||    
T  13307622 ggaaaattctatggtgaagtcatgagaatgatttttctggtgaagt 13307667  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 33906223 - 33906271
Alignment:
Q  137 ggaaaattttatggtgaagtcataagaatgacttttctagtgaagtcaa 185  Q
    |||||||| ||||||||| | || |||||||||||||| ||||||||||    
T  33906223 ggaaaattctatggtgaaattatgagaatgacttttctggtgaagtcaa 33906271  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 42346 - 42393
Alignment:
Q  135 taggaaaattttatggtgaagtcataagaatgacttttctagtgaagt 182  Q
    ||||||||||||||||||||||||| ||||| | |||||| |||||||    
T  42346 taggaaaattttatggtgaagtcatgagaataatttttctggtgaagt 42393  T

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