View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_low_57 (Length: 208)
Name: NF3164_low_57
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 33609750 - 33609578
Alignment:
| Q |
16 |
ctttgtcctgtggttcttatatttactgggaaaatctcacttggaataagccatgttagaggaccccatgaccaaccaaaaccagcagagtataaacata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33609750 |
ctttgtcctgtggttcttatatttactgggaaaatctcacttggaataagccatgttagaggaccccatgaccaaccaaaaccagcagagtataaacata |
33609651 |
T |
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| Q |
116 |
atagcaccaatactaatattgcattccccttggatatgtcgtttgtaccatcaacaccagacaccactgctag |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33609650 |
atagcaccaatactaatattgcattccccttggatatgtcgtttgtaccgtcaacaccagacaccactgctag |
33609578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 33619032 - 33618863
Alignment:
| Q |
16 |
ctttgtcctgtggttcttatatttactgggaaaatctcacttggaataagccatgttagaggaccccatgaccaaccaaaaccagcagagtataaacata |
115 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| | |
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| T |
33619032 |
ctttgtcctgtggttcttatttttactgggaaaatctcacttggaataagccatgttaatggaccccatgaccaaccaaaacctgcagagtagaaacaca |
33618933 |
T |
|
| Q |
116 |
atagcaccaatactaatattgcattccccttggatatgtcgtttgtaccatcaacaccagacaccactgc |
185 |
Q |
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| T |
33618932 |
atagcaccaataccactattgcattgcccttggatatgtcctttgtaccatcaacaccagtcaccactgc |
33618863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 33628235 - 33628063
Alignment:
| Q |
16 |
ctttgtcctgtggttcttatatttactgggaaaatctcacttggaataagccatgttagaggaccccatgaccaaccaaaaccagcagagtataaacata |
115 |
Q |
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|||||||| ||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||| ||| ||| |||||||||| |||| || ||||| | |
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| T |
33628235 |
ctttgtccagtgcttcttatatttactggaaaaatctcagttggaattagccatgttagaggactccacgacaaaccaaaacccgcagcatagaaacaca |
33628136 |
T |
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| Q |
116 |
atagcaccaatactaatattgcattccccttggatatgtcgtttgtaccatcaacaccagacaccactgctag |
188 |
Q |
| |
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||| |||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||| ||||||||||| |
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| T |
33628135 |
ttagtaccaataccaatattgcattgccctttgatatgtcatttgtaccatcaacaccagttaccactgctag |
33628063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 33589152 - 33588992
Alignment:
| Q |
15 |
actttgtcctgtggttcttatatttactgggaaaatctcacttggaataagccatgttagaggaccccatgaccaaccaaaaccagcagagtataaacat |
114 |
Q |
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||||||||| || ||||| || |||| |||||||| ||||||||||| ||||| || || |||||||| |||||||||||||| || | ||| |||||| |
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| T |
33589152 |
actttgtccagttgttctgatttttaaggggaaaatttcacttggaattagccaggtgagtggaccccaagaccaaccaaaacctgcggcgtagaaacat |
33589053 |
T |
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| Q |
115 |
aatagcaccaatactaatattgcattccccttggatatgtcgtttgtaccatcaacaccag |
175 |
Q |
| |
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| || |||||||| ||| ||||||| ||||| || |||| ||||||||||||||||||| |
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| T |
33589052 |
agtaaaaccaataccaatgttgcatttccctttgacatgtgctttgtaccatcaacaccag |
33588992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 33596324 - 33596164
Alignment:
| Q |
15 |
actttgtcctgtggttcttatatttactgggaaaatctcacttggaataagccatgttagaggaccccatgaccaaccaaaaccagcagagtataaacat |
114 |
Q |
| |
|
||||||||| || ||||| || |||| |||||||| ||||||||||| ||||| || || |||||||| |||||||||||||| || | ||| |||||| |
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| T |
33596324 |
actttgtccagttgttctgatttttaaggggaaaatttcacttggaattagccaggtgagtggaccccaagaccaaccaaaacctgcggcgtagaaacat |
33596225 |
T |
|
| Q |
115 |
aatagcaccaatactaatattgcattccccttggatatgtcgtttgtaccatcaacaccag |
175 |
Q |
| |
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| || |||||||| ||| ||||||| ||||| || |||| ||||||||||||||||||| |
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| T |
33596224 |
agtaaaaccaataccaatgttgcatttccctttgacatgtgctttgtaccatcaacaccag |
33596164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 33603455 - 33603295
Alignment:
| Q |
15 |
actttgtcctgtggttcttatatttactgggaaaatctcacttggaataagccatgttagaggaccccatgaccaaccaaaaccagcagagtataaacat |
114 |
Q |
| |
|
||||||||| || ||||| || |||| |||||||| ||||||||||| ||||| || || |||||||| |||||||||||||| || | ||| |||||| |
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| T |
33603455 |
actttgtccagttgttctgatttttaaggggaaaatttcacttggaattagccaggtgagtggaccccaagaccaaccaaaacctgcggcgtagaaacat |
33603356 |
T |
|
| Q |
115 |
aatagcaccaatactaatattgcattccccttggatatgtcgtttgtaccatcaacaccag |
175 |
Q |
| |
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| || |||||||| ||| ||||||| ||||| || |||| ||||||||||||||||||| |
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| T |
33603355 |
agtaaaaccaataccaatgttgcatttccctttgacatgtgctttgtaccatcaacaccag |
33603295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 184
Target Start/End: Complemental strand, 33623821 - 33623680
Alignment:
| Q |
43 |
gggaaaatctcacttggaataagccatgttagaggaccccatgaccaaccaaaaccagcagagtataaacataatagcaccaatactaatattgcattcc |
142 |
Q |
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|||||||||||| ||||||| |||||||||||||| | ||| ||| || | ||||| |||| | ||||||| ||| ||||||| ||||||||||| | |
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| T |
33623821 |
gggaaaatctcagttggaattagccatgttagagggctccacgacaaatctaaacccgcagcacagaaacatattagtaccaatatcaatattgcattgc |
33623722 |
T |
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| Q |
143 |
ccttggatatgtcgtttgtaccatcaacaccagacaccactg |
184 |
Q |
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|||| |||||||| ||||||||||||||||||| ||||||| |
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| T |
33623721 |
cctttgatatgtcatttgtaccatcaacaccaggaaccactg |
33623680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 33563540 - 33563473
Alignment:
| Q |
46 |
aaaatctcacttggaataagccatgttagaggaccccatgaccaaccaaaaccagcagagtataaaca |
113 |
Q |
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||||| ||||||||||| | |||| ||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
33563540 |
aaaatttcacttggaattatccataatagaggaccccatgaccaaccaaaacctgcagagtagaaaca |
33563473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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