View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3164_low_6 (Length: 536)
Name: NF3164_low_6
Description: NF3164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3164_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 17 - 527
Target Start/End: Original strand, 31530393 - 31530902
Alignment:
| Q |
17 |
aatttcaaatcattgcttgaagcaacattggcaatggtgcaaacgtgcattaaaatgataaagggaattgcataagccattgcttgaagtttttcatatg |
116 |
Q |
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| T |
31530393 |
aatttcaaatcattacttgaagcgacattggcaatggtgcaaacgtgcattaaaatgataaagggaattgcataagccattgcttgaagtttttcatatg |
31530492 |
T |
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| Q |
117 |
gtaattgagacaaggttttggctaactatatatagtagagttacttgaagttaaagggattggataatttggtccttaaacttaatgcaatcgtaaaagg |
216 |
Q |
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| T |
31530493 |
gtaattgagacaaggttttggctaactatatatagtagagttacttgaagttaaagggattggataatttggtccttaaacttaatgcaatcggaaaagg |
31530592 |
T |
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| Q |
217 |
atgtatgaaattctttttattagtaggaatcgaatttgggagcaagtctttcatagtcataaacaatgggcagaag-tttaggcacacatggaaaagcaa |
315 |
Q |
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| T |
31530593 |
atgtatgaaattctttttattagtaggaatcgaatttgggagcaagtctttcatagttacaaacaatgggcagaagttttaggcacacatgcaaaagcaa |
31530692 |
T |
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| Q |
316 |
aatattgaatcactttttcaatcatttcttgaaatagtttaagataaggtaaagttataaatttgtgagtgtgcctaaataatttatcacttgcacgact |
415 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
31530693 |
aatattgaatcacttattcaatcatttcttgaaatagtttaagataaggtaaagttataaatttgtcagtgtgcctaaataatttatcacttgcgcga-- |
31530790 |
T |
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| Q |
416 |
ctttaaacatattgcacatcaatcacttacgctagatattggtggtaaatgatagttgaaattgataatatttaatcatattattttcttcaagataatt |
515 |
Q |
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||||||| ||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31530791 |
ctttaaatatattgcacatcaatcatttgcgctagacattggtggtaaatgatagttgaaattgataatatttaatcatgttattttcttcaagataatt |
31530890 |
T |
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| Q |
516 |
ttcgagaataat |
527 |
Q |
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|||||||||||| |
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| T |
31530891 |
ttcgagaataat |
31530902 |
T |
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