View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3167_high_1 (Length: 495)

Name: NF3167_high_1
Description: NF3167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3167_high_1
NF3167_high_1
[»] chr4 (14 HSPs)
chr4 (198-449)||(7628418-7628669)
chr4 (13-384)||(7636859-7637233)
chr4 (11-368)||(7615061-7615418)
chr4 (11-345)||(7606070-7606404)
chr4 (11-132)||(7628668-7628789)
chr4 (132-311)||(7656209-7656388)
chr4 (13-79)||(7633490-7633556)
chr4 (136-206)||(39070932-39071002)
chr4 (244-320)||(39097547-39097623)
chr4 (246-311)||(39075095-39075160)
chr4 (139-200)||(39087996-39088057)
chr4 (139-191)||(39097682-39097734)
chr4 (139-198)||(39091389-39091448)
chr4 (149-206)||(39082336-39082393)
[»] chr7 (5 HSPs)
chr7 (11-432)||(8936052-8936464)
chr7 (13-384)||(8913546-8913913)
chr7 (61-314)||(8941738-8941990)
chr7 (11-65)||(8938828-8938882)
chr7 (13-79)||(8919071-8919137)
[»] chr3 (2 HSPs)
chr3 (135-335)||(40147440-40147640)
chr3 (135-311)||(8102323-8102499)
[»] chr6 (2 HSPs)
chr6 (138-343)||(6500335-6500540)
chr6 (245-299)||(11968807-11968861)
[»] scaffold0190 (2 HSPs)
scaffold0190 (140-206)||(4435-4501)
scaffold0190 (245-343)||(4292-4390)
[»] chr8 (3 HSPs)
chr8 (139-200)||(15745020-15745081)
chr8 (235-315)||(15196335-15196415)
chr8 (247-309)||(34173991-34174053)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 198 - 449
Target Start/End: Complemental strand, 7628669 - 7628418
Alignment:
Q  198 tcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggag 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7628669 tcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggag 7628570  T
Q  298 gcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaatttgatacagtattgttcagatgcttcaat 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  7628569 gcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaatttggtgcagtattgttcagatgcttcaat 7628470  T
Q  398 ttggtttttgtgtgacaacccatgaataatttttttatgtccaagtctaagg 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7628469 ttggtttttgtgtgacaacccatgaataatttttttatgtccaagtctaagg 7628418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 384
Target Start/End: Complemental strand, 7637233 - 7636859
Alignment:
Q  13 gagatgaacaagttaattgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctttcttaggataaccaa---ca 109  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||| ||||| |  | ||   ||    
T  7637233 gagatgaacaagttaattgcttcacacactgatgagaagttgaagaatcattacgagtcttggttaagaaatccaagcttttttaggcttgctaagaaca 7637134  T
Q  110 tagccaaaaacaatttcttagtcattagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggata 209  Q
    | |  ||||| |||||| ||  |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||    
T  7637133 tggtaaaaaataatttcatatccattagtagttctccatggtttgatgtttatggtaatgattttggatggggaaagcctctggcagttcgtagtggata 7637034  T
Q  210 taaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaat 309  Q
    |||||| || |||||| |||  |||||||| |||||||||||||||||||| ||||||||| | |||||||||   ||||||||||||| ||||||||||    
T  7637033 taaaataaatggacttattacggtatttgccggaatagaagaaggtagtatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaat 7636934  T
Q  310 gaccctcaattt-gtggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaatttgatacagtattgtt 384  Q
    ||||| ||||||  |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||    
T  7636933 gaccc-caatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgtaaaatcaatatgatacaatattgtt 7636859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 368
Target Start/End: Complemental strand, 7615418 - 7615061
Alignment:
Q  11 gtgagatgaacaagttaattgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctttcttaggataacc-aaca 109  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||  |||| || || ||||    
T  7615418 gtgagatgaacaagttaattgtttcacacactgatgagaagttgaagaatcactacgagtcttggttaagaaatccaagctttgctagg-tatcctaaca 7615320  T
Q  110 tagccaaaaacaatttcttagtcattagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggata 209  Q
    | || ||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  7615319 tggcaaaaaataatttcatagccattagcagttctccgtggtttgatgtttatggtaatgattttggttggggaaagcctgtggcagttcgtagtggata 7615220  T
Q  210 taaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaat 309  Q
    ||||   || |||||| |||  || |||||||||||||||||||||||||| || |||||| | |||||| |  | ||||||||||||||||||||||||    
T  7615219 taaaggaaatggacttattacggtttttgctggaatagaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaat 7615120  T
Q  310 gaccctcaatttgtggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaat 368  Q
    |||||||||||  ||||||||| |||||||||||||||| ||| |||||||||||||||    
T  7615119 gaccctcaattcatggatgttgcgtccaactaatgcaacatgatgtgtgtaaaatcaat 7615061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 7606404 - 7606070
Alignment:
Q  11 gtgagatgaacaagttaattgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctttcttaggataaccaacat 110  Q
    ||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| ||||||||||||| ||||| |  | | |||    
T  7606404 gtgagatgaacaaattaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcat 7606305  T
Q  111 agccaaaaacaatttcttagtcattagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatat 210  Q
      |||| || |||||| ||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||||    
T  7606304 gtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatat 7606205  T
Q  211 aaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatg 310  Q
    ||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || |||||||||||||||||| ||    
T  7606204 aaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtg 7606105  T
Q  311 accctcaatttgtggatgttgtgtccaactaatgc 345  Q
    |||| || ||  ||||||| ||| |||||||||||    
T  7606104 acccacatttcatggatgtcgtgaccaactaatgc 7606070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 7628789 - 7628668
Alignment:
Q  11 gtgagatgaacaagttaattgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctttcttaggataaccaacat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7628789 gtgagatgaacaagttaattgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagcttccttaggataaccaacat 7628690  T
Q  111 agccaaaaacaatttcttagtc 132  Q
    ||||||||||||||||||||||    
T  7628689 agccaaaaacaatttcttagtc 7628668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 132 - 311
Target Start/End: Original strand, 7656209 - 7656388
Alignment:
Q  132 cattagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaat 231  Q
    ||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||  || ||| | |||  |    
T  7656209 cattagcagttctccaaagtttgatgtttatggtaatgattttggatggggaaagcctgtggcagttcgtagtggaaataaaacaaatggaatggtttgt 7656308  T
Q  232 gtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatga 311  Q
    |  ||||||||||||||||||| ||| |||||||||||| | |||||||||||| |||||||||||||||||||||||||    
T  7656309 gcctttgctggaatagaagaagctagcattgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatga 7656388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 7633556 - 7633490
Alignment:
Q  13 gagatgaacaagttaattgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaa 79  Q
    |||||||||||||||||||||||||||||| |||||| | |||| |||||||| |||||||||||||    
T  7633556 gagatgaacaagttaattgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaa 7633490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 39071002 - 39070932
Alignment:
Q  136 agcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtgg 206  Q
    |||||||||||  |||||||||||| ||| |||||||| || ||||||||||| ||||||||||| |||||    
T  39071002 agcagttctccgaggtttgatgtttttggcaatgattttggctggggaaagccagtggcggttcgaagtgg 39070932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 39097623 - 39097547
Alignment:
Q  244 atagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatt 320  Q
    ||||||||||||||||||||  || || | || ||| |||| || ||||||||||| ||||||||||||||||||||    
T  39097623 atagaagaaggtagtattgatgttgaagtttgcctttcttatgatattttggaggctatgggaaatgaccctcaatt 39097547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 39075160 - 39075095
Alignment:
Q  246 agaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatga 311  Q
    ||||||||||||| ||||  ||||| | ||||||||||| || ||||||||||| |||||||||||    
T  39075160 agaagaaggtagtgttgatattcaagtttgtcttccttatgatattttggaggctatgggaaatga 39075095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 39088057 - 39087996
Alignment:
Q  139 agttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcg 200  Q
    ||||||||| ||||||||||||||| ||||||||| || ||||| |||||||| | ||||||    
T  39088057 agttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgtaggggttcg 39087996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 39097734 - 39097682
Alignment:
Q  139 agttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgt 191  Q
    ||||||||| |||||||||||||||||||||| || || ||||| ||||||||    
T  39097734 agttctccaaggtttgatgtttatggtaatgactttggttggggtaagcctgt 39097682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 39091448 - 39091389
Alignment:
Q  139 agttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggtt 198  Q
    ||||||||  ||||||||||||| ||||||||||| || ||||| |||||||||| ||||    
T  39091448 agttctccgaggtttgatgtttacggtaatgattttggttgggggaagcctgtgggggtt 39091389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 39082393 - 39082336
Alignment:
Q  149 ggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtgg 206  Q
    ||||||||||||||||||||||||| || ||||| ||||| || | |||||| |||||    
T  39082393 ggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgg 39082336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 11 - 432
Target Start/End: Original strand, 8936052 - 8936464
Alignment:
Q  11 gtgagatgaacaagttaattgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctttcttaggataaccaacat 110  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||  ||         ||||    
T  8936052 gtgagatgaacaagttaattgctttacacactgatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttagta---------acat 8936142  T
Q  111 agccaaaaacaatttcttagtcattagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatat 210  Q
      | ||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || | |||| ||||||||    
T  8936143 gccaaaaaagaatttcatagccattagcagttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgtagcaggtcgtggtggatat 8936242  T
Q  211 aaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatg 310  Q
    |||   || |||||| |||  |||||||| |||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||||||||||||    
T  8936243 aaagcaaatggacttattacagtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatg 8936342  T
Q  311 accctcaatttgtggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaatttgatacagtattgttcagatgcttcaatttggtttttgtgt 410  Q
    ||||||||||  ||||||||| |||||||||||||||| ||| |||||||||||||||||| |||| ||| ||| | |||||| |||||| |||||||||    
T  8936343 accctcaattcatggatgttgcgtccaactaatgcaacatgatgtgtgtaaaatcaatttggtacaatatcgttgaaatgcttgaatttgttttttgtgt 8936442  T
Q  411 gacaacccatgaataatttttt 432  Q
    |||||||| |||||||||||||    
T  8936443 gacaacccttgaataatttttt 8936464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 13 - 384
Target Start/End: Original strand, 8913546 - 8913913
Alignment:
Q  13 gagatgaacaagttaattgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctttcttaggataaccaa---ca 109  Q
    ||||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||||||||| ||||||||||||| ||||| |  | ||   ||    
T  8913546 gagatgaacaagttaattgcttcacacgctgacgagaagttgaagaatcattacgagtcttggttaagaaatccaagctttgttaggcttgctaagaaca 8913645  T
Q  110 tagccaaaaacaatttcttagtcattagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggata 209  Q
    | |  ||||  |||||| ||  |||||| |||||||||| ||||||||||||||||||||||       |||||||||||||||| ||||||||||||||    
T  8913646 tggtaaaaactaatttcatatccattagtagttctccatagtttgatgtttatggtaatgat-------ggggaaagcctgtggcagttcgtagtggata 8913738  T
Q  210 taaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaat 309  Q
    |||||| || |||||| |||  |||||||  |||||||||||||||| ||| ||||||||| | |||||||||   ||||||||||||| ||||||||||    
T  8913739 taaaataaatggacttattacagtatttgtcggaatagaagaaggtattatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaat 8913838  T
Q  310 gaccctcaattt-gtggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaatttgatacagtattgtt 384  Q
    ||||| ||||||  |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||    
T  8913839 gaccc-caatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgtaaaatcaatatgatacaatattgtt 8913913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 61 - 314
Target Start/End: Original strand, 8941738 - 8941990
Alignment:
Q  61 cactacgagtcttggttaaaaaatccaagctttcttaggataaccaacatagccaaaaacaatttcttagtcattagcagttctccatggtttgatgttt 160  Q
    ||||| ||||||||||||| ||||||||||||| ||||| |  | | |||  |||| || |||||||||  |||||| ||||||||||||||||||||||    
T  8941738 cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcttatccattagtagttctccatggtttgatgttt 8941837  T
Q  161 atggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtat 260  Q
    ||||||||||||||||||||||||| ||| | || || ||||||||||||||||| || ||| |||| ||||||||||||||||||||||||||||||||    
T  8941838 atggtaatgatttcggatggggaaaacctatagcagt-cgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtat 8941936  T
Q  261 tgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccc 314  Q
    |||||||||| | ||||||||||||||| |||||||||||||||||| ||||||    
T  8941937 tgaccttcaagtatgtcttccttacgaggttttggaggcaatgggaagtgaccc 8941990  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 8938828 - 8938882
Alignment:
Q  11 gtgagatgaacaagttaattgcttcacacactgatgagatgttgaagaatcacta 65  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  8938828 gtgagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcacta 8938882  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 8919071 - 8919137
Alignment:
Q  13 gagatgaacaagttaattgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaa 79  Q
    ||||||||||| |||||||||||||||||| |||||| | |||| |||||||| |||||||||||||    
T  8919071 gagatgaacaaattaattgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaa 8919137  T

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Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 135 - 335
Target Start/End: Original strand, 40147440 - 40147640
Alignment:
Q  135 tagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgta 234  Q
    ||||| ||| || |||||||||||||||||||||||||| ||||||||| | |||||||| ||||| |||||| ||||||| |  ||| |  ||| ||||    
T  40147440 tagcaattccccgtggtttgatgtttatggtaatgattttggatggggagaacctgtggcagttcgcagtggaaataaaataagtggaatgattactgta 40147539  T
Q  235 tttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggatgttgtgt 334  Q
    |||||||||| |||||||||||| || ||| ||||| | ||||||||| || ||||||||||||||||||||||||||| | | ||  ||||||||||||    
T  40147540 tttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgttgtgt 40147639  T
Q  335 c 335  Q
    |    
T  40147640 c 40147640  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 135 - 311
Target Start/End: Complemental strand, 8102499 - 8102323
Alignment:
Q  135 tagcagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgta 234  Q
    ||||||||| |  ||||||||||||||||| ||| |||| ||||||||||| || ||||| ||||| |||||| |||||   |  |||||  ||  ||||    
T  8102499 tagcagttcccagtggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgta 8102400  T
Q  235 tttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatga 311  Q
    |||||||||||||||||||||||||| ||||||||| | ||||||||| || |||||||||||||||||||||||||    
T  8102399 tttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga 8102323  T

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Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 138 - 343
Target Start/End: Complemental strand, 6500540 - 6500335
Alignment:
Q  138 cagttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtggatataaaatgaaaggacttgttaatgtattt 237  Q
    |||||| || ||||||||| |||||||||||||||| |||||||| || || |||||  |||| |||| | |||||||  | ||  | |||| |||||||    
T  6500540 cagttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagtgtaaataaaatagatggtatggttagtgtattt 6500441  T
Q  238 gctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggatgttgtgtcca 337  Q
    ||||||| |||| |||||||||| ||||||||| | |||||||||||| ||| |||||| |||||| |  |||||||| | ||  |||||| ||||||||    
T  6500440 gctggaaaagaataaggtagtatagaccttcaagtttgtcttccttacaagactttggaagcaatgagttatgaccctaatttcatggatgctgtgtcca 6500341  T
Q  338 actaat 343  Q
    ||||||    
T  6500340 actaat 6500335  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 11968861 - 11968807
Alignment:
Q  245 tagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggc 299  Q
    |||||||||||||||| ||| || || | |||||||||||| |||||||||||||    
T  11968861 tagaagaaggtagtatagactttgaagtgtgtcttccttacaagattttggaggc 11968807  T

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Target: scaffold0190 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 4501 - 4435
Alignment:
Q  140 gttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcgtagtgg 206  Q
    ||||||| |||||||||||||||||||||||||| || |||||||| ||||||| |||||| |||||    
T  4501 gttctccttggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgg 4435  T

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Target: scaffold0190; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 343
Target Start/End: Complemental strand, 4390 - 4292
Alignment:
Q  245 tagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaat 343  Q
    ||||||| ||||| || |||||| || | ||||||||||  || ||||||||||||||  ||||||| ||| | ||| |||||||||||||| ||||||    
T  4390 tagaagatggtagcatggaccttgaagtatgtcttccttgtgaaattttggaggcaattagaaatgatcctgagtttatggatgttgtgtcctactaat 4292  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 15745020 - 15745081
Alignment:
Q  139 agttctccatggtttgatgtttatggtaatgatttcggatggggaaagcctgtggcggttcg 200  Q
    ||||| || ||||||||||||||||| |||||||| || |||||||| ||||||| ||||||    
T  15745020 agttcaccctggtttgatgtttatggcaatgattttggttggggaaaacctgtgggggttcg 15745081  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 15196335 - 15196415
Alignment:
Q  235 tttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccct 315  Q
    |||||||| | ||||||||| ||||| ||| || || | |||||||| ||| ||||||||||||  |||||||||||||||    
T  15196335 tttgctggtaaagaagaaggaagtatggactttgaagtgtgtcttccatacaagattttggaggtcatgggaaatgaccct 15196415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 309
Target Start/End: Complemental strand, 34174053 - 34173991
Alignment:
Q  247 gaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaat 309  Q
    |||||||||||||||||  ||||| | ||||||||||| || ||||||||||| || ||||||    
T  34174053 gaagaaggtagtattgatattcaagtttgtcttccttatgatattttggaggctattggaaat 34173991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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