View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3167_high_10 (Length: 238)
Name: NF3167_high_10
Description: NF3167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3167_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 25311338 - 25311120
Alignment:
| Q |
17 |
atctgtaaacatgccaaataagttaatagtggcaatgtcccactggttgacgttattgacatgacacagaaaagagaataatcttcagtaaccttatttg |
116 |
Q |
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| T |
25311338 |
atctgtaaacatgccaaataagttaatagtggcaatgtcccactggttgacattattgacatgacacagaaaagagaataatcttcagtaaccttatttg |
25311239 |
T |
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| Q |
117 |
ttatgtttgagtaagaggaagatactgattctgcattttgcttatagatatttagacgtgacataacctgaaaatgattaaacaagtacacataagtcgc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25311238 |
ttatgtttgagtaagaggaagatactgattctgcattttgcttatagatatttaggcgtgacataacctgaaaatgattaaataagtacacataagtcgc |
25311139 |
T |
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| Q |
217 |
ttcagagcaacaccagatt |
235 |
Q |
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||||||||||||||||||| |
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| T |
25311138 |
ttcagagcaacaccagatt |
25311120 |
T |
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