View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3167_high_11 (Length: 229)

Name: NF3167_high_11
Description: NF3167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3167_high_11
NF3167_high_11
[»] chr5 (4 HSPs)
chr5 (15-122)||(21249443-21249550)
chr5 (18-79)||(21249564-21249625)
chr5 (117-217)||(21249365-21249467)
chr5 (169-217)||(21249629-21249677)
[»] chr2 (30 HSPs)
chr2 (15-122)||(16973145-16973252)
chr2 (15-122)||(2916459-2916565)
chr2 (18-112)||(38982726-38982820)
chr2 (18-122)||(44594397-44594501)
chr2 (117-217)||(44594480-44594582)
chr2 (117-222)||(16973306-16973413)
chr2 (117-217)||(16973067-16973169)
chr2 (35-122)||(24125818-24125905)
chr2 (117-222)||(2916376-2916483)
chr2 (117-218)||(38982799-38982902)
chr2 (140-217)||(44594251-44594329)
chr2 (117-217)||(11533686-11533789)
chr2 (35-122)||(24126089-24126175)
chr2 (8-79)||(16973266-16973338)
chr2 (140-220)||(40987913-40987993)
chr2 (17-79)||(2916579-2916641)
chr2 (18-75)||(38982641-38982698)
chr2 (145-217)||(13559573-13559645)
chr2 (140-192)||(24126190-24126242)
chr2 (117-222)||(40987655-40987762)
chr2 (39-93)||(40987834-40987888)
chr2 (31-116)||(13559468-13559552)
chr2 (15-56)||(16973228-16973269)
chr2 (140-177)||(24125920-24125957)
chr2 (127-197)||(38982580-38982652)
chr2 (151-222)||(2916655-2916726)
chr2 (15-79)||(11533646-11533710)
chr2 (140-172)||(13559352-13559384)
chr2 (153-217)||(24125673-24125737)
chr2 (15-55)||(44594381-44594421)
[»] chr1 (23 HSPs)
chr1 (15-122)||(22683222-22683329)
chr1 (15-122)||(10824528-10824635)
chr1 (15-122)||(18844540-18844647)
chr1 (16-122)||(19056309-19056416)
chr1 (117-217)||(10824611-10824713)
chr1 (117-217)||(37189590-37189692)
chr1 (140-217)||(19056153-19056230)
chr1 (117-223)||(22683138-22683246)
chr1 (15-122)||(37189502-37189614)
chr1 (117-217)||(18844462-18844564)
chr1 (8-78)||(22683344-22683415)
chr1 (140-217)||(15825788-15825863)
chr1 (140-217)||(37189371-37189447)
chr1 (117-217)||(19056393-19056495)
chr1 (140-217)||(18844715-18844793)
chr1 (15-79)||(15825723-15825787)
chr1 (15-79)||(19056231-19056295)
chr1 (8-62)||(10824441-10824496)
chr1 (8-59)||(37189440-37189492)
chr1 (71-122)||(15825660-15825710)
chr1 (140-177)||(10824411-10824448)
chr1 (15-52)||(22683305-22683342)
chr1 (15-55)||(10824512-10824552)
[»] chr3 (19 HSPs)
chr3 (15-122)||(51663331-51663438)
chr3 (15-122)||(46003407-46003514)
chr3 (15-122)||(20538007-20538115)
chr3 (140-221)||(46003247-46003328)
chr3 (143-217)||(40364227-40364301)
chr3 (140-222)||(51663517-51663599)
chr3 (144-217)||(20538205-20538278)
chr3 (117-217)||(51663253-51663355)
chr3 (8-75)||(51663456-51663524)
chr3 (17-72)||(20538143-20538198)
chr3 (36-122)||(40244787-40244874)
chr3 (117-217)||(40244628-40244731)
chr3 (15-64)||(40244707-40244756)
chr3 (8-56)||(46003390-46003439)
chr3 (158-222)||(40244873-40244937)
chr3 (143-223)||(40364038-40364118)
chr3 (31-79)||(46003345-46003393)
chr3 (117-216)||(20537930-20538031)
chr3 (22-79)||(40364129-40364186)
[»] chr6 (18 HSPs)
chr6 (14-122)||(11643829-11643937)
chr6 (15-122)||(18494892-18494998)
chr6 (33-122)||(24690518-24690607)
chr6 (117-217)||(24798864-24798966)
chr6 (141-215)||(11643754-11643828)
chr6 (140-217)||(24690358-24690435)
chr6 (140-217)||(11644014-11644092)
chr6 (140-217)||(2216845-2216922)
chr6 (15-122)||(24798782-24798888)
chr6 (8-66)||(24798698-24798757)
chr6 (140-217)||(24690613-24690690)
chr6 (140-217)||(18494999-18495076)
chr6 (140-217)||(18494737-18494813)
chr6 (117-203)||(24798642-24798730)
chr6 (15-56)||(11643913-11643954)
chr6 (8-57)||(11643973-11644021)
chr6 (23-64)||(18494821-18494862)
chr6 (31-79)||(24690456-24690504)
[»] chr8 (24 HSPs)
chr8 (15-122)||(13884570-13884677)
chr8 (15-122)||(29714623-29714730)
chr8 (15-112)||(42126463-42126561)
chr8 (27-116)||(11867774-11867864)
chr8 (117-210)||(29714784-29714879)
chr8 (35-122)||(14996560-14996647)
chr8 (142-222)||(13884487-13884567)
chr8 (140-217)||(11867949-11868025)
chr8 (140-217)||(13884755-13884832)
chr8 (8-79)||(2554052-2554124)
chr8 (15-79)||(14996661-14996725)
chr8 (144-223)||(43416260-43416339)
chr8 (140-222)||(29714540-29714622)
chr8 (140-217)||(42126651-42126728)
chr8 (8-75)||(11867888-11867956)
chr8 (8-63)||(13884706-13884762)
chr8 (8-79)||(29714744-29714816)
chr8 (140-211)||(2554117-2554188)
chr8 (142-217)||(42126385-42126460)
chr8 (15-56)||(2554014-2554055)
chr8 (15-56)||(14996623-14996664)
chr8 (83-121)||(29714608-29714646)
chr8 (8-72)||(15862533-15862598)
chr8 (8-56)||(29714698-29714747)
[»] chr7 (20 HSPs)
chr7 (18-113)||(6474449-6474544)
chr7 (15-112)||(28715723-28715820)
chr7 (117-221)||(28715641-28715747)
chr7 (15-122)||(47373545-47373651)
chr7 (8-97)||(30862403-30862494)
chr7 (140-217)||(28715909-28715986)
chr7 (127-222)||(41985908-41986005)
chr7 (155-217)||(6474562-6474624)
chr7 (140-222)||(30862487-30862569)
chr7 (8-77)||(41985983-41986053)
chr7 (22-79)||(6474369-6474426)
chr7 (140-217)||(30862221-30862298)
chr7 (151-222)||(41986186-41986257)
chr7 (140-217)||(6474283-6474360)
chr7 (130-222)||(47373717-47373810)
chr7 (18-79)||(47373665-47373725)
chr7 (8-75)||(28715848-28715916)
chr7 (68-112)||(41986079-41986123)
chr7 (83-122)||(30862284-30862323)
chr7 (83-120)||(30862464-30862501)
[»] chr4 (16 HSPs)
chr4 (15-122)||(39161369-39161475)
chr4 (15-99)||(47096879-47096963)
chr4 (140-217)||(50509395-50509472)
chr4 (140-217)||(55173520-55173597)
chr4 (140-220)||(37996065-37996145)
chr4 (15-91)||(50509280-50509356)
chr4 (117-217)||(39161291-39161393)
chr4 (140-198)||(55173356-55173414)
chr4 (17-75)||(39161493-39161551)
chr4 (129-217)||(47097054-47097141)
chr4 (144-198)||(39161558-39161612)
chr4 (143-217)||(47096803-47096876)
chr4 (15-79)||(37996146-37996210)
chr4 (17-79)||(47097001-47097064)
chr4 (15-56)||(47096963-47097004)
chr4 (15-56)||(55173416-55173457)
[»] scaffold0060 (2 HSPs)
scaffold0060 (143-222)||(22975-23054)
scaffold0060 (17-71)||(22915-22969)
[»] scaffold0781 (1 HSPs)
scaffold0781 (140-217)||(5302-5379)


Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 21249443 - 21249550
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  21249443 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcaaaaaaatgttaacttatgtaccaatttggtcccttatgttttgctctg 21249542  T
Q  115 ttactagt 122  Q
    ||||||||    
T  21249543 ttactagt 21249550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 21249625 - 21249564
Alignment:
Q  18 tatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaac 79  Q
    ||||||||||| ||||| |||||||| |||||||||||||||||||| | ||||| ||||||    
T  21249625 tatgttttgctccgttattagttttagtcctttctgttagtttctctaaaaaaaaggttaac 21249564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 21249467 - 21249365
Alignment:
Q  117 actagtaattaagcaaaacatatg--accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    ||||||||  |||||||||||| |  || |||||| ||||| ||||| ||||| ||||||||| |||||| ||||||   |||| |||||||||||||||    
T  21249467 actagtaacgaagcaaaacataggggactaaattggtacaatttataattaggggaccaaattgagacaatcaattacggtaagggaccaggtgattgaa 21249368  T
Q  215 taa 217  Q
    |||    
T  21249367 taa 21249365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 21249629 - 21249677
Alignment:
Q  169 gaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||||||||| ||||||| ||||| ||| || |||||||||||    
T  21249629 gaccaaattaagacaatcaattaagttaagggacaagatgattgaataa 21249677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 16973145 - 16973252
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctg 114  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |    
T  16973145 ccctatgttttgcttcgttactagttttaattctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccctatgttttgctccg 16973244  T
Q  115 ttactagt 122  Q
    ||||||||    
T  16973245 ttactagt 16973252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 2916459 - 2916565
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctg 114  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |    
T  2916459 ccctatgttttgctttgttactagttttaatcctttctgttagtttctctca-aaaaacgttaacttatgtaccaatttggtcccctacattttgctccg 2916557  T
Q  115 ttactagt 122  Q
    ||| ||||    
T  2916558 ttattagt 2916565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 38982820 - 38982726
Alignment:
Q  18 tatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctc 112  Q
    ||||||||||||| |||||||||||| || |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  38982820 tatgttttgcttcattactagttttagtcatttctggtagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccttatgttttgctc 38982726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 44594501 - 44594397
Alignment:
Q  18 tatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctgtta 117  Q
    |||||||||||||||||||||||||| || |||||| |||||||||||| |||||||| ||||||||||||||||| ||||| ||| |||||||| |||     
T  44594501 tatgttttgcttcgttactagttttagtcatttctggtagtttctctcaaaaaaacgtaaacttatgtaccaatttagtcccctatgttttgctccgttc 44594402  T
Q  118 ctagt 122  Q
    |||||    
T  44594401 ctagt 44594397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 44594480 - 44594582
Alignment:
Q  117 actagtaattaagcaaaacatat--gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    ||||||||  ||||||||||||   |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||  |||| ||||||||||    
T  44594480 actagtaacgaagcaaaacataatggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaattaaattaaaggaccgggtgattgaa 44594579  T
Q  215 taa 217  Q
    |||    
T  44594580 taa 44594582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 16973306 - 16973413
Alignment:
Q  117 actagtaattaagcaaaacatat--gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    |||||||||  |||||||||||   ||||||||||| |||||||||||||||| ||||||||| |||||| ||||||| ||||| ||||| |||||||||    
T  16973306 actagtaatggagcaaaacatagaggaccaaattgacacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccatgtgattgaa 16973405  T
Q  215 taaacctt 222  Q
    ||| ||||    
T  16973406 taagcctt 16973413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 16973169 - 16973067
Alignment:
Q  117 actagtaattaagcaaaacatatg--accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    ||||||||  |||||||||||| |  ||||||||| |||||| |||||||||| |||||||||||||||| ||||||| ||||| |||| ||||||||||    
T  16973169 actagtaacgaagcaaaacataggggaccaaattggtacaaactatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtgattgaa 16973070  T
Q  215 taa 217  Q
    |||    
T  16973069 taa 16973067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 24125905 - 24125818
Alignment:
Q  35 ctagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctgttactagt 122  Q
    ||||||||| | |||||||||||||||||| | |||||| |||||||||||| |||||||||||| ||| ||||||||||||| ||||    
T  24125905 ctagttttagttctttctgttagtttctctaaaaaaaacattaacttatgtatcaatttggtcccctatgttttgctctgttattagt 24125818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 2916483 - 2916376
Alignment:
Q  117 actagtaattaagcaaaacatatg--accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    ||||||||  |||||||||||| |  ||||||||| ||||||||||||||||| || |||||| |||||| ||||||| |||||||| | ||||||||||    
T  2916483 actagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaagagatcgggtgattgaa 2916384  T
Q  215 taaacctt 222  Q
    ||| ||||    
T  2916383 taagcctt 2916376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 38982799 - 38982902
Alignment:
Q  117 actagtaattaagcaaaacatatg--accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    ||||||||| |||||||||||| |  ||||||||||||||||||||||||| | ||||||||| |||||| ||||||| ||||| |||  ||||| ||||    
T  38982799 actagtaatgaagcaaaacataaggaaccaaattgatacaaattatagttaagggaccaaattgagacaatcaattaagttaagggacttggtgactgaa 38982898  T
Q  215 taaa 218  Q
    ||||    
T  38982899 taaa 38982902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 44594329 - 44594251
Alignment:
Q  140 gaccaaattgatacaaattatagttagg-agaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||||||||||||||||||||| | |||||||| |||||| ||||||| ||||| |||| |||||||||||||    
T  44594329 gaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaagggaccgggtgattgaataa 44594251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 11533686 - 11533789
Alignment:
Q  117 actagtaattaagcaaaacatatg---accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattga 213  Q
    ||||||||| |||||||||||| |   ||||||||| |||||||||||||| || ||||||||| |||||| || |||| |||||||||| | |||||||    
T  11533686 actagtaataaagcaaaacatagggggaccaaattggtacaaattatagttgggggaccaaattgagacaatcacttaagttaagagacctgatgattga 11533785  T
Q  214 ataa 217  Q
    ||||    
T  11533786 ataa 11533789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 24126175 - 24126089
Alignment:
Q  35 ctagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctgttactagt 122  Q
    ||||||||| |||||| ||||||||||||| | |||||| |||||||||||| |||||||||||  ||| ||||||||| ||||||||    
T  24126175 ctagttttagtcctttatgttagtttctctaa-aaaaacattaacttatgtatcaatttggtccactatgttttgctctattactagt 24126089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 16973338 - 16973266
Alignment:
Q  8 atttggtcc-ctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaac 79  Q
    ||||||||| |||||||||||| | |||||||||||| || ||||||| ||||||||||| ||||||||||||    
T  16973338 atttggtcctctatgttttgctccattactagttttagtcatttctgtcagtttctctcaaaaaaacgttaac 16973266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 40987913 - 40987993
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataaacc 220  Q
    ||||||||| |||||||||||||||||  || |||||| ||||||  |||||| |||||||||| |||||||||| |||||    
T  40987913 gaccaaattaatacaaattatagttagaggatcaaattgagacaattaattaagttaagagaccgggtgattgaacaaacc 40987993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 2916641 - 2916579
Alignment:
Q  17 ctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaac 79  Q
    |||| |||||||  ||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  2916641 ctatattttgctctgttactagttttggtcctttctgttagtttctctcaaaaaaacgttaac 2916579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 38982641 - 38982698
Alignment:
Q  18 tatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgt 75  Q
    |||||||||||||||| ||||||||| |||||||| |||||| |||||| ||||||||    
T  38982641 tatgttttgcttcgttgctagttttagtcctttctattagttactctcaaaaaaacgt 38982698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 13559573 - 13559645
Alignment:
Q  145 aattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||||||||||||||||  |||||||| | |||| ||||||| ||||| |||| | |||||||||||    
T  13559573 aattgatacaaattatagttagggaaccaaattgaaacaatcaattaagttaagggaccggatgattgaataa 13559645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 24126190 - 24126242
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaa 192  Q
    |||||||||| ||||||||||||||||||||||||||| ||| || |||||||    
T  24126190 gaccaaattggtacaaattatagttaggagaccaaattgagaaaatcaattaa 24126242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 40987762 - 40987655
Alignment:
Q  117 actagtaattaagcaaaacatatga--ccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    ||||||||  || ||||||||||||  | |||||| |||||||||||||||||  |||||||| |||||| ||||||| ||||| |||| | ||||| ||    
T  40987762 actagtaacaaatcaaaacatatgagactaaattggtacaaattatagttagggaaccaaattgagacaatcaattaagttaagggaccggatgattaaa 40987663  T
Q  215 taaacctt 222  Q
    ||| ||||    
T  40987662 taagcctt 40987655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 40987888 - 40987834
Alignment:
Q  39 ttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaattt 93  Q
    ||||| || ||||||||||||||||||| |||| |||||||||||||| ||||||    
T  40987888 ttttagtcatttctgttagtttctctcaaaaaaccgttaacttatgtatcaattt 40987834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 13559552 - 13559468
Alignment:
Q  31 gttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctgtt 116  Q
    |||||||| |||| || ||| ||||||||||||| | |||||||||||| ||||||  ||||||||||  ||| ||||||||||||    
T  13559552 gttactagatttagtcatttatgttagtttctct-agaaaaacgttaacctatgtattaatttggtcctctatgttttgctctgtt 13559468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 16973228 - 16973269
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgtta 56  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  16973228 ccctatgttttgctccgttactagttttagtcctttctgtta 16973269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 24125920 - 24125957
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaatt 177  Q
    |||||||||| |||||||||||||||||||||||||||    
T  24125920 gaccaaattggtacaaattatagttaggagaccaaatt 24125957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 38982652 - 38982580
Alignment:
Q  127 aagcaaaacata--tgaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaa 197  Q
    ||||||||||||  ||||||||||| |||||||||||||||||   ||||||| |||||| ||||||| ||||    
T  38982652 aagcaaaacataaatgaccaaattggtacaaattatagttagggagccaaattgagacaatcaattaagttaa 38982580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 2916655 - 2916726
Alignment:
Q  151 tacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataaacctt 222  Q
    ||||||| ||||||||| ||||||||| |||||| ||||||| |||||  |  || ||||||||||||||||    
T  2916655 tacaaataatagttaggggaccaaattgagacaatcaattaagttaaggaattagatgattgaataaacctt 2916726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 11533710 - 11533646
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaac 79  Q
    |||||||||||||||  |||||||||||| || ||||| ||||| ||||| | ||||||| ||||    
T  11533710 ccctatgttttgctttattactagttttagtcatttctattagtgtctctaaaaaaaacgctaac 11533646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 13559384 - 13559352
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagacc 172  Q
    ||||||||||| |||||||||||||||||||||    
T  13559384 gaccaaattgaaacaaattatagttaggagacc 13559352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 24125737 - 24125673
Alignment:
Q  153 caaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    ||||||||||||||| || |||||| |||||| ||||||| ||||| |||| | ||| |||||||    
T  24125737 caaattatagttaggggatcaaattgagacaatcaattaagttaagggaccggttgagtgaataa 24125673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 44594421 - 44594381
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgtt 55  Q
    |||||||||||||| |||| ||||||||| |||||||||||    
T  44594421 ccctatgttttgctccgttcctagttttagtcctttctgtt 44594381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 22683222 - 22683329
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctg 114  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| |    
T  22683222 ccctatgttttgctttgttactagttttagtcctttctgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccctatgttttgctccg 22683321  T
Q  115 ttactagt 122  Q
    ||||||||    
T  22683322 ttactagt 22683329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 10824635 - 10824528
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctg 114  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||||||||| ||||||||||||||||||||||||||| |||| ||| |||||||| |    
T  10824635 ccctatgttttgcttcgttactagttttagtcctttctagtagtttctctcaaaaaaacgttaacttatgtaccaatttgatcccctatgttttgctccg 10824536  T
Q  115 ttactagt 122  Q
    || |||||    
T  10824535 ttcctagt 10824528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 18844540 - 18844647
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctg 114  Q
    ||||||||||||||||||||||||||||| || |||||| |||||||||||| |||||||| ||||||||||||||||| ||||| ||| |||| ||| |    
T  18844540 ccctatgttttgcttcgttactagttttagtcatttctggtagtttctctcaaaaaaacgtaaacttatgtaccaatttagtcccctatgttttactccg 18844639  T
Q  115 ttactagt 122  Q
    || |||||    
T  18844640 ttcctagt 18844647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 19056416 - 19056309
Alignment:
Q  16 cctatgttttgcttcgttactagttttaatcctttctgttagtttctctc-ataaaaacgttaacttatgtaccaatttggtcccttatattttgctctg 114  Q
    |||||||||||||| ||||||||||||| || ||||||| |||||||||| | |||||||||||||||||||||||||||||||| | | |||||||  |    
T  19056416 cctatgttttgctttgttactagttttagtcatttctgtcagtttctctcaaaaaaaacgttaacttatgtaccaatttggtcccctgtgttttgcttcg 19056317  T
Q  115 ttactagt 122  Q
    ||||||||    
T  19056316 ttactagt 19056309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 10824611 - 10824713
Alignment:
Q  117 actagtaattaagcaaaacatatg--accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    ||||||||  |||||||||||| |  ||||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||| |||| | ||||||||    
T  10824611 actagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaa 10824710  T
Q  215 taa 217  Q
    |||    
T  10824711 taa 10824713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 37189590 - 37189692
Alignment:
Q  117 actagtaattaagcaaaacatatg--accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    ||||||||  |||||||||||| |  ||||||||| |||||||||||| |||| ||||||||| |||||| ||||||| ||||| |||||||||||||||    
T  37189590 actagtaacgaagcaaaacataggggaccaaattggtacaaattatagataggggaccaaattgagacaatcaattaagttaagggaccaggtgattgaa 37189689  T
Q  215 taa 217  Q
    |||    
T  37189690 taa 37189692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 19056230 - 19056153
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||||||||||||||| ||||| ||||||||||| |||| ||||||| ||||| || |||||||||||||||    
T  19056230 gaccaaattgatacaaattataattaggggaccaaattaatacaatcaattaagttaagggatcaggtgattgaataa 19056153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 117 - 223
Target Start/End: Complemental strand, 22683246 - 22683138
Alignment:
Q  117 actagtaattaagcaaaacatatg--accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    ||||||||  |||||||||||| |  ||||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||  || | ||||||||||    
T  22683246 actagtaacaaagcaaaacataggggaccaaattgatacaaattatagttaggggaccaaattgagacaatcaattaagttaaaggagcgggtgattgaa 22683147  T
Q  215 taaacctta 223  Q
    ||| |||||    
T  22683146 taagcctta 22683138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 37189614 - 37189502
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctct-----cataaaaacgttaacttatgtaccaatttggtcccttatattttg 109  Q
    ||||||||||||||||||||||||||||| || |||||| ||||||||||      | ||||||||||||||||||||||||| |||||| | | |||||    
T  37189614 ccctatgttttgcttcgttactagttttagtcatttctggtagtttctctaaaaaaaaaaaaacgttaacttatgtaccaattcggtcccctgtgttttg 37189515  T
Q  110 ctctgttactagt 122  Q
    ||| ||| |||||    
T  37189514 ctccgttcctagt 37189502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 18844564 - 18844462
Alignment:
Q  117 actagtaattaagcaaaacatatg--accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    ||||||||  |||||||||||| |  ||||||||||||||||||||||||||| ||||||||| ||| || ||||||| ||||| ||||| ||| |||||    
T  18844564 actagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggggaccaaattgagataatcaattaagttaagggaccatgtggttgaa 18844465  T
Q  215 taa 217  Q
    |||    
T  18844464 taa 18844462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 22683415 - 22683344
Alignment:
Q  8 atttggtcc-ctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaa 78  Q
    ||||||||| |||||||||||| |||||||||||||| |||||||| ||||||||||||| |||||||||||    
T  22683415 atttggtcctctatgttttgctccgttactagttttagtcctttctcttagtttctctcaaaaaaacgttaa 22683344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 15825788 - 15825863
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||| ||||||||||||||||||  ||||||| |||||| ||||||| |||||||||| |||||||||||||    
T  15825788 gaccaaattggtacaaattatagttagga--ccaaattgagacaatcaattaagttaagagaccgggtgattgaataa 15825863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 37189447 - 37189371
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||| ||||||||||||||| ||||||||||| |||||| ||||||| ||||| |||| |||||||||||||    
T  37189447 gaccaaattggtacaaattatagttatgagaccaaattgagacaatcaattaagttaag-gaccgggtgattgaataa 37189371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 19056393 - 19056495
Alignment:
Q  117 actagtaattaagcaaaacatatga--ccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    ||||||||  |||||||||||| ||  |||||||| |||| |||||||||||| ||||||||||| |||| ||||||| ||||| |||| | ||||||||    
T  19056393 actagtaacaaagcaaaacataggataccaaattggtacagattatagttaggggaccaaattaaaacaatcaattaagttaagggaccggatgattgaa 19056492  T
Q  215 taa 217  Q
    |||    
T  19056493 taa 19056495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 18844715 - 18844793
Alignment:
Q  140 gaccaaattgatacaaattatagtta-ggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||||||||||||||||||| ||| |||||||| |||||| ||||||| ||||| || | |||||||||||||    
T  18844715 gaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaagggatcgggtgattgaataa 18844793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 15825787 - 15825723
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaac 79  Q
    ||||||||||||||| |||| |||||||| |||||| | ||||||||||||| ||||||||||||    
T  15825787 ccctatgttttgctttgttattagttttagtcctttttattagtttctctcaaaaaaacgttaac 15825723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 19056231 - 19056295
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaac 79  Q
    |||||| |||||||| ||||||||||||| || ||||||||||||||||||| |||||| |||||    
T  19056231 ccctatattttgctttgttactagttttagtcttttctgttagtttctctcaaaaaaacattaac 19056295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 10824441 - 10824496
Alignment:
Q  8 atttggtcc-ctatgttttgcttcgttactagttttaatcctttctgttagtttct 62  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||    
T  10824441 atttggtcctctatgttttgctccgttactagttttagtcctttctgttagtttct 10824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 37189440 - 37189492
Alignment:
Q  8 atttggtcc-ctatgttttgcttcgttactagttttaatcctttctgttagtt 59  Q
    ||||||||| |||||||||||| |||||||||||||| |||||||||||||||    
T  37189440 atttggtcctctatgttttgctccgttactagttttagtcctttctgttagtt 37189492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 15825660 - 15825710
Alignment:
Q  71 aacgttaacttatgtaccaatttggtcccttatattttgctctgttactagt 122  Q
    |||||||||||||||| |||||||||||||||| |||| | |||||||||||    
T  15825660 aacgttaacttatgtatcaatttggtcccttatgttttac-ctgttactagt 15825710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 10824448 - 10824411
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaatt 177  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  10824448 gaccaaattgatacaaattataattaggggaccaaatt 10824411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 22683305 - 22683342
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttct 52  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  22683305 ccctatgttttgctccgttactagttttagtcctttct 22683342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 10824552 - 10824512
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgtt 55  Q
    |||||||||||||| |||| ||||||||| |||||||||||    
T  10824552 ccctatgttttgctccgttcctagttttagtcctttctgtt 10824512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 51663331 - 51663438
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctg 114  Q
    ||||||||||||||||||||||||||||| || |||||| |||||||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||    
T  51663331 ccctatgttttgcttcgttactagttttagtcatttctggtagtttctctcaaaaaaacgttaacttatgtactaatttggtcccctatgttttgctctg 51663430  T
Q  115 ttactagt 122  Q
    || |||||    
T  51663431 ttcctagt 51663438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 46003514 - 46003407
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctg 114  Q
    |||| ||||||||||| |||||||||||| ||||||||| |||||||||| | |||||||||||||||||||||||||||||||  ||| |||||||  |    
T  46003514 ccctttgttttgcttcattactagttttagtcctttctggtagtttctctaaaaaaaacgttaacttatgtaccaatttggtcctctatgttttgcttcg 46003415  T
Q  115 ttactagt 122  Q
    ||||||||    
T  46003414 ttactagt 46003407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 20538007 - 20538115
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctct-cataaaaacgttaacttatgtaccaatttggtcccttatattttgctct 113  Q
    |||||||||||||||| |||||||||||| |||||||| |||||||||||  | ||||||||||| |||||||||||||||||||| ||| ||||||| |    
T  20538007 ccctatgttttgcttcattactagttttagtcctttctattagtttctctaaaaaaaaacgttaatttatgtaccaatttggtcccctatgttttgcttt 20538106  T
Q  114 gttactagt 122  Q
    |||| ||||    
T  20538107 gttattagt 20538115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 46003328 - 46003247
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataaacct 221  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| ||||||| ||||  |||| |||||||||||||||||    
T  46003328 gaccaaattgatacaaattatagttaggggaccaaattaaaacaatcaattaagttaaaggaccgggtgattgaataaacct 46003247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 40364227 - 40364301
Alignment:
Q  143 caaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    ||||||| ||||||||||||||||||||||||||| | |||| ||||||| ||||| ||||| ||||||||||||    
T  40364227 caaattggtacaaattatagttaggagaccaaattgaaacaatcaattaagttaagggaccaagtgattgaataa 40364301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 51663517 - 51663599
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataaacctt 222  Q
    |||||||||| ||||||||||||||||| ||||||||| |||||| ||||||| ||||| |||| | ||||||||||| ||||    
T  51663517 gaccaaattgctacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagcctt 51663599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 20538205 - 20538278
Alignment:
Q  144 aaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||||||||||||||||| || |||||| |||||| ||||||||||||  |||| |||||||||||||    
T  20538205 aaattgatacaaattatagttaggggatcaaattgagacaatcaattaaattaaaggaccgggtgattgaataa 20538278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 51663355 - 51663253
Alignment:
Q  117 actagtaattaagcaaaacatatg--accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    ||||||||  |||||||||||| |  || |||||||||||||||||||||||  ||||| ||||| |||| ||||||| |||||||||| ||||||| ||    
T  51663355 actagtaacgaagcaaaacataggggactaaattgatacaaattatagttagtggaccatattaaaacaatcaattaagttaagagaccgggtgattaaa 51663256  T
Q  215 taa 217  Q
    |||    
T  51663255 taa 51663253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 51663524 - 51663456
Alignment:
Q  8 atttggtcc-ctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgt 75  Q
    ||||||||| ||||||||||||  ||||||||||||| || ||||||||||||||||||| ||||||||    
T  51663524 atttggtcctctatgttttgctatgttactagttttagtcatttctgttagtttctctcaaaaaaacgt 51663456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 20538198 - 20538143
Alignment:
Q  17 ctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaa 72  Q
    |||||||||||| |||||||||||||| || ||||||||||||||||||| |||||    
T  20538198 ctatgttttgctccgttactagttttagtcatttctgttagtttctctcaaaaaaa 20538143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 40244874 - 40244787
Alignment:
Q  36 tagttttaatcctttctgttagtttctctcataaaaa-cgttaacttatgtaccaatttggtcccttatattttgctctgttactagt 122  Q
    |||||||| |||||||||||||||||||| | ||||| |||||||||||| ||||||||| |||||| | ||||| || ||| |||||    
T  40244874 tagttttagtcctttctgttagtttctctaaaaaaaaacgttaacttatgcaccaatttgatcccttgtgttttgatccgttgctagt 40244787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 40244731 - 40244628
Alignment:
Q  117 actagtaattaagcaaaacatatg---accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattga 213  Q
    ||||||||  |||||||||||| |   ||||||||| ||||||||||||||| | ||||||||| |||||| ||||||| ||||| || | | |||||||    
T  40244731 actagtaacaaagcaaaacataggggaaccaaattggtacaaattatagttaagggaccaaattgagacaatcaattaagttaagggatcggatgattga 40244632  T
Q  214 ataa 217  Q
    ||||    
T  40244631 ataa 40244628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 40244707 - 40244756
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctct 64  Q
    ||||||||||||||| ||||||||||||| || |||||||||||||||||    
T  40244707 ccctatgttttgctttgttactagttttagtcatttctgttagtttctct 40244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 46003439 - 46003390
Alignment:
Q  8 atttggtcc-ctatgttttgcttcgttactagttttaatcctttctgtta 56  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  46003439 atttggtcctctatgttttgcttcgttactagttttagtcctttctgtta 46003390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 40244873 - 40244937
Alignment:
Q  158 tatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataaacctt 222  Q
    |||||||||| ||||||||| |||||| ||||||| ||||| |||  ||||||||||||| ||||    
T  40244873 tatagttaggggaccaaattgagacaatcaattaagttaagggacggggtgattgaataagcctt 40244937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 40364118 - 40364038
Alignment:
Q  143 caaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataaacctta 223  Q
    ||||||||||||||||||| ||| | ||||||||||||| || ||||||| ||||| ||   |||||| |||||| |||||    
T  40364118 caaattgatacaaattataattatgggaccaaattaagataatcaattaagttaagggattgggtgatcgaataagcctta 40364038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 46003345 - 46003393
Alignment:
Q  31 gttactagttttaatcctttctgttagtttctctcataaaaacgttaac 79  Q
    ||||| ||||||| |||||| ||||||||||||||| ||||||||||||    
T  46003345 gttacaagttttagtcctttttgttagtttctctcaaaaaaacgttaac 46003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 20538031 - 20537930
Alignment:
Q  117 actagtaattaagcaaaacatatg--accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    ||||||||| |||||||||||| |  |||||||||  |||||||||||||||| || |||||| | |  | ||||||| ||||| |||||| ||||| ||    
T  20538031 actagtaatgaagcaaaacataggggaccaaattggaacaaattatagttaggggatcaaattgataatatcaattaagttaagggaccagatgattcaa 20537932  T
Q  215 ta 216  Q
    ||    
T  20537931 ta 20537930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 40364129 - 40364186
Alignment:
Q  22 ttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaac 79  Q
    ||||||| ||||| |||||||| || ||| ||||||||||||||| |||||| |||||    
T  40364129 ttttgctccgttattagttttagtcatttttgttagtttctctcaaaaaaacattaac 40364186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 11643829 - 11643937
Alignment:
Q  14 tccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctct 113  Q
    ||||||||||||| || ||||||||||||| |||| ||||||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||     
T  11643829 tccctatgttttgttttgttactagttttagtcctctctgttagtttctctaaaaaaaacgttaacttatgtaccaatttggtcccctatgttttgctcc 11643928  T
Q  114 gttactagt 122  Q
    |||||||||    
T  11643929 gttactagt 11643937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 18494998 - 18494892
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctg 114  Q
    |||||| ||||| | ||||| |||||||| | |||||||||||||||||| | ||||||||||||||||||| |||||||||||| ||||||| |||||     
T  18494998 ccctatattttgatccgttattagttttagttctttctgttagtttctctaa-aaaaacgttaacttatgtagcaatttggtcccctatatttcgctcta 18494900  T
Q  115 ttactagt 122  Q
    ||||||||    
T  18494899 ttactagt 18494892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 24690607 - 24690518
Alignment:
Q  33 tactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctgttactagt 122  Q
    ||||||||||| |||||||| ||| ||||||||| |||||||||||||||||||||||||||||| | ||| ||||||||| ||| ||||    
T  24690607 tactagttttagtcctttctattaatttctctcaaaaaaacgttaacttatgtaccaatttggtctcctatgttttgctctattaatagt 24690518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 24798864 - 24798966
Alignment:
Q  117 actagtaattaagcaaaacatatg--accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    ||||||||  |||||||||||| |  ||||||||||||||||||||||||||| || ||||||||||||| ||||||| ||||| || | ||||||||||    
T  24798864 actagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggggatcaaattaagacaatcaattaatttaagggatcgggtgattgaa 24798963  T
Q  215 taa 217  Q
    |||    
T  24798964 taa 24798966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 11643828 - 11643754
Alignment:
Q  141 accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaat 215  Q
    ||||||||||||||||||||||||||| || |||||| |||||| ||||||||||||| |||| |||||||||||    
T  11643828 accaaattgatacaaattatagttaggggatcaaattgagacaatcaattaaattaagggaccgggtgattgaat 11643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 24690435 - 24690358
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||| ||||||||||||| ||| ||||||||| |||||| ||||||| |||||||||| |||||||||||||    
T  24690435 gaccaaattggtacaaattatagtaaggggaccaaattgagacaatcaattaagttaagagaccgggtgattgaataa 24690358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 11644014 - 11644092
Alignment:
Q  140 gaccaaattgatacaaattatagttaggag-accaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||||||||||||||||||||| | |||||||| |||||| ||||||| ||||| |||| |||||||||||||    
T  11644014 gaccaaattgatacaaattatagttagggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataa 11644092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 2216845 - 2216922
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||| ||||||||||||||||| ||||||||| |||||| ||||||| ||||| |||| | |||||||||||    
T  2216845 gaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataa 2216922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 24798888 - 24798782
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctct-cataaaaacgttaacttatgtaccaatttggtcccttatattttgctct 113  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||| |||  | |||||||||||||  |||| |||||||||||| ||| ||||||||     
T  24798888 ccctatgttttgcttcgttactagttttagtcctttctagtagtttttctaaaaaaaaacgttaact--tgtatcaatttggtcccctatgttttgctcc 24798791  T
Q  114 gttactagt 122  Q
    ||| |||||    
T  24798790 gttcctagt 24798782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 24798698 - 24798757
Alignment:
Q  8 atttggtcc-ctatgttttgcttcgttactagttttaatcctttctgttagtttctctca 66  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||    
T  24798698 atttggtcctctatgttttgcttcgttactagttttagtcatttctgttagtttctctca 24798757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 24690613 - 24690690
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||| |||||||||||||||||  |||||||||| |||| ||||||| ||||| || | |||||||||||||    
T  24690613 gaccaaattggtacaaattatagttagggaaccaaattaaaacaatcaattaagttaagggatcgggtgattgaataa 24690690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 18494999 - 18495076
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||||||||||||||||||| | || |||||||| | || ||||||| ||||| ||| || |||||||||||    
T  18494999 gaccaaattgatacaaattatagttaagggatcaaattaatataatcaattaagttaagggactagatgattgaataa 18495076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 18494813 - 18494737
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    ||||||| || |||||||||||| |||| ||||||||| |||||| |||| || ||||| ||||| ||||||||||||    
T  18494813 gaccaaaatggtacaaattatagctagg-gaccaaattgagacaatcaataaagttaagggaccatgtgattgaataa 18494737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 24798730 - 24798642
Alignment:
Q  117 actagtaattaagcaaaacatat--gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagacc 203  Q
    ||||||||  ||||||||||||   |||||||||| ||||||||||||| ||| ||||||||| | |||| ||||||| ||||| ||||    
T  24798730 actagtaacgaagcaaaacatagaggaccaaattggtacaaattatagtcaggggaccaaattgaaacaaccaattaagttaagggacc 24798642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 11643913 - 11643954
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgtta 56  Q
    |||||||||||||| |||||||||||||| || |||||||||    
T  11643913 ccctatgttttgctccgttactagttttagtcatttctgtta 11643954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 11644021 - 11643973
Alignment:
Q  8 atttggtccctatgttttgcttcgttactagttttaatcctttctgttag 57  Q
    |||||||||||||||||| ||| ||||||||||||| || ||||||||||    
T  11644021 atttggtccctatgtttt-ctttgttactagttttagtcttttctgttag 11643973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 18494821 - 18494862
Alignment:
Q  23 tttgcttcgttactagttttaatcctttctgttagtttctct 64  Q
    ||||||| ||||||||||||| |||||| |||||||||||||    
T  18494821 tttgctttgttactagttttagtcctttttgttagtttctct 18494862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 24690456 - 24690504
Alignment:
Q  31 gttactagttttaatcctttctgttagtttctctcataaaaacgttaac 79  Q
    |||||||||||||  | ||||||||| ||||||||| ||||||||||||    
T  24690456 gttactagttttagccatttctgttattttctctcaaaaaaacgttaac 24690504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 13884570 - 13884677
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctg 114  Q
    ||||||||||||||||||||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||||||| || ||||| |||||||| |    
T  13884570 ccctatgttttgcttcgttactagttttagtcttttctggtagtttctctcaaaaaaacgttaacttatgtaccaatttgatctcttatgttttgctccg 13884669  T
Q  115 ttactagt 122  Q
    || |||||    
T  13884670 ttcctagt 13884677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 29714623 - 29714730
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctg 114  Q
    |||||| |||||||| |||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||| ||| |    
T  29714623 ccctatattttgctttgttactagctttaatcatttctgttagtttctctcgtaaaaacgttaacttatgtaccaatttggtctcctatgttttactccg 29714722  T
Q  115 ttactagt 122  Q
    ||||||||    
T  29714723 ttactagt 29714730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 42126463 - 42126561
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctct-cataaaaacgttaacttatgtaccaatttggtcccttatattttgctc 112  Q
    ||||||||||||||||| ||||||||||| ||||||||| |||||||||| || ||||||||||||||||||| |||||||||||| ||| ||||||||    
T  42126463 ccctatgttttgcttcgctactagttttagtcctttctggtagtttctctacaaaaaaacgttaacttatgtatcaatttggtcccctatgttttgctc 42126561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 11867774 - 11867864
Alignment:
Q  27 cttcgttactagttttaatcctttctgttagtttctctc-ataaaaacgttaacttatgtaccaatttggtcccttatattttgctctgtt 116  Q
    |||||||||||||||||||| |||||| ||||||||||| | |||||||||||||||| ||||||||| |||| |||| ||||||||||||    
T  11867774 cttcgttactagttttaatcttttctgatagtttctctcaaaaaaaacgttaacttatttaccaatttagtcctttatgttttgctctgtt 11867864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 29714784 - 29714879
Alignment:
Q  117 actagtaattaagcaaaacatat--gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgat 210  Q
    ||||||||| ||||||||||||   |||||||||||||||||||||||||| | ||||||||||| |||| ||||||| ||||| |||||||||||    
T  29714784 actagtaatgaagcaaaacatagaggaccaaattgatacaaattatagttaagggaccaaattaaaacaatcaattaagttaagggaccaggtgat 29714879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 14996560 - 14996647
Alignment:
Q  35 ctagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctgttactagt 122  Q
    ||||||||  |||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||||  |||||||||    
T  14996560 ctagtttttgtcctctctgttagtttctctcaaaaaaacgttaacttatgtactaatttggtcccctatgttttgcttcgttactagt 14996647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 13884567 - 13884487
Alignment:
Q  142 ccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataaacctt 222  Q
    |||||||| ||||||||||||||||| ||||||||| |||||| ||||||| ||||| |||| ||||||||||||| ||||    
T  13884567 ccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcctt 13884487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 11867949 - 11868025
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||||||||||||||||||| |  |||||||| |||||| ||||||| ||||| ||||||||||||||||||    
T  11867949 gaccaaattgatacaaattatagttaaggaaccaaattgagacaatcaattaagttaag-gaccaggtgattgaataa 11868025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 13884755 - 13884832
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||| ||||||||||||||||| ||| ||||| |||||| ||||||| ||||| |||| |||||||||||||    
T  13884755 gaccaaattggtacaaattatagttaggggactaaattgagacaatcaattaagttaagggaccgggtgattgaataa 13884832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 2554124 - 2554052
Alignment:
Q  8 atttggtc-cctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaac 79  Q
    |||||||| |||||||||||||| |||||| |||||| | |||||||||||||||||||| ||||||||||||    
T  2554124 atttggtctcctatgttttgctttgttacttgttttagttctttctgttagtttctctcaaaaaaacgttaac 2554052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 14996725 - 14996661
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaac 79  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||| ||| ||| ||||||||    
T  14996725 ccctatgttttgctttgttactagttttagtcctttctgttagtttctatcaaaaacacgttaac 14996661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 43416339 - 43416260
Alignment:
Q  144 aaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataaacctta 223  Q
    |||||||||||||||||||||||| ||  |||||||||||| ||||||| ||||||||||   ||||||||||| |||||    
T  43416339 aaattgatacaaattatagttaggggattaaattaagacaatcaattaagttaagagaccgaatgattgaataagcctta 43416260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 29714622 - 29714540
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataaacctt 222  Q
    |||||||||| |||||| ||||||| || ||||||||| |||||| ||||||| ||||| |||| ||||||||||||| ||||    
T  29714622 gaccaaattggtacaaactatagtttggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcctt 29714540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 42126651 - 42126728
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||| ||||||||||||||||| || |||||| ||| || ||||||| ||||| |||| |||||||||||||    
T  42126651 gaccaaattggtacaaattatagttaggggatcaaattgagataatcaattaagttaagggaccgggtgattgaataa 42126728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 11867956 - 11867888
Alignment:
Q  8 atttggtcc-ctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgt 75  Q
    ||||||||| |||||||||| || || |||||||||| |||||| ||||||||||||||| ||||||||    
T  11867956 atttggtcctctatgttttgatttgtcactagttttagtcctttatgttagtttctctcaaaaaaacgt 11867888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 13884762 - 13884706
Alignment:
Q  8 atttggtcc-ctatgttttgcttcgttactagttttaatcctttctgttagtttctc 63  Q
    ||||||||| |||||||||||||||||||| |||||| |||||| ||||||||||||    
T  13884762 atttggtcctctatgttttgcttcgttactggttttagtcctttttgttagtttctc 13884706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 29714816 - 29714744
Alignment:
Q  8 atttggtcc-ctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaac 79  Q
    ||||||||| |||||||||||||| |||||||||||| || ||| ||| ||||||||||| ||||| ||||||    
T  29714816 atttggtcctctatgttttgcttcattactagttttagtcatttatgtcagtttctctcaaaaaaatgttaac 29714744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 2554117 - 2554188
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgatt 211  Q
    ||||||||||  |||||||||||||||| || |||||| |||||| ||||||| ||||| ||| ||||||||    
T  2554117 gaccaaattggaacaaattatagttaggggatcaaattgagacaatcaattaagttaagggactaggtgatt 2554188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 42126460 - 42126385
Alignment:
Q  142 ccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||||||||||||||||||   | |||||| ||||||  |||||| ||||| |||| |||||||||||||    
T  42126460 ccaaattgatacaaattatagttagagaatcaaattgagacaattaattaagttaagggaccgggtgattgaataa 42126385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 2554014 - 2554055
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgtta 56  Q
    ||||||||||| ||||||||||||||||| ||||||||||||    
T  2554014 ccctatgttttacttcgttactagttttagtcctttctgtta 2554055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 14996623 - 14996664
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgtta 56  Q
    ||||||||||||||||||||||||||||| || |||||||||    
T  14996623 ccctatgttttgcttcgttactagttttagtcttttctgtta 14996664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 29714608 - 29714646
Alignment:
Q  83 tgtaccaatttggtcccttatattttgctctgttactag 121  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  29714608 tgtaccaatttggtcccctatattttgctttgttactag 29714646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 15862598 - 15862533
Alignment:
Q  8 atttggtcc-ctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaa 72  Q
    ||||||||| ||||| |||||| ||||||| |||||||| |||||  ||||||||||||| |||||    
T  15862598 atttggtcctctatgatttgctccgttactggttttaatactttccattagtttctctcaaaaaaa 15862533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 29714698 - 29714747
Alignment:
Q  8 atttggtc-cctatgttttgcttcgttactagttttaatcctttctgtta 56  Q
    |||||||| |||||||||| || |||||||||||||| ||||||||||||    
T  29714698 atttggtctcctatgttttactccgttactagttttagtcctttctgtta 29714747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 6474544 - 6474449
Alignment:
Q  18 tatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctct 113  Q
    |||| ||||||  ||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  6474544 tatgctttgctctgttactagttttagtcctttatgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccttatgttttgctct 6474449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 28715723 - 28715820
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctc 112  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||| | |||||||||||||||| ||||||||||||  | ||||||||||||    
T  28715723 ccctatgttttgcttcgttactagttttagtcctttctggtagtttctctaaaaaaaacgttaacttatataccaatttggtttcctatattttgctc 28715820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 117 - 221
Target Start/End: Complemental strand, 28715747 - 28715641
Alignment:
Q  117 actagtaattaagcaaaacatatg--accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    ||||||||  |||||||||||| |  |||||||||||||||||||||||||||| |||||||||| ||||  |||||| ||||| |||| ||||||||||    
T  28715747 actagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggaaaccaaattaaaacaattaattaagttaagggaccgggtgattgaa 28715648  T
Q  215 taaacct 221  Q
    |||||||    
T  28715647 taaacct 28715641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 47373545 - 47373651
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctg 114  Q
    ||||||||||||||  ||| ||||||||| || ||| ||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||| |    
T  47373545 ccctatgttttgctctgttgctagttttagtcatttatgttagtttctctca-aaaaacgttaacttatgtaccaatttagtcccctatgttttgctccg 47373643  T
Q  115 ttactagt 122  Q
    ||| ||||    
T  47373644 ttattagt 47373651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 30862494 - 30862403
Alignment:
Q  8 atttggtccct-atgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaa-cgttaacttatgtaccaatttggtc 97  Q
    ||||||||||| ||||||||||  ||||||| ||||| || ||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  30862494 atttggtcccttatgttttgctctgttactaattttagtcttttctgttagtttctctcaaaaaaatcgttaacttatgtaccaatttggtc 30862403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 28715909 - 28715986
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||| ||||||||||||||||| |||||||||||||||| ||||||| ||||| |||| ||| |||||||||    
T  28715909 gaccaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtaattgaataa 28715986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 41986005 - 41985908
Alignment:
Q  127 aagcaaaacatatg--accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataaacctt 222  Q
    ||||||||||||||  |||||||||| |||||||||||||||| || |||||| |||||| ||||||| ||||| |||  ||||||||||||| ||||    
T  41986005 aagcaaaacatatgggaccaaattgaaacaaattatagttaggggatcaaattgagacaatcaattaagttaagggactgggtgattgaataagcctt 41985908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 6474562 - 6474624
Alignment:
Q  155 aattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| || | |||||||||||||    
T  6474562 aattatagttaggagaccaaattaagacaatcaattaagttaagggatcgggtgattgaataa 6474624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 30862487 - 30862569
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataaacctt 222  Q
    ||||||||||||||||||||||||||||  || ||||| | |||| ||||| ||||||| |||||  ||||||||||||||||    
T  30862487 gaccaaattgatacaaattatagttagggaacaaaattgaaacaatcaattcaattaagggaccaattgattgaataaacctt 30862569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 41985983 - 41986053
Alignment:
Q  8 atttggtccc-tatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgtta 77  Q
    |||||||||| |||||||||||| ||||||| ||||| ||||||| |||||||||||||| ||||||||||    
T  41985983 atttggtcccatatgttttgctttgttactaattttagtcctttccgttagtttctctcaaaaaaacgtta 41986053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 6474369 - 6474426
Alignment:
Q  22 ttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaac 79  Q
    |||||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  6474369 ttttgctttgttactagttttagtcttttctgttagtttctctcaaaaaaacgttaac 6474426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 30862298 - 30862221
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||| ||||||||||||||||| ||||||||| |||||| ||||||| ||||| ||||   |||||||||||    
T  30862298 gaccaaattggtacaaattatagttaggggaccaaattcagacaatcaattaagttaagggaccgaatgattgaataa 30862221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 41986186 - 41986257
Alignment:
Q  151 tacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataaacctt 222  Q
    ||||||||||||||||| || |||||| |||||||||||||| |||||  ||| ||||||||||||| ||||    
T  41986186 tacaaattatagttaggggatcaaattgagacaaacaattaagttaaggaaccgggtgattgaataagcctt 41986257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 6474360 - 6474283
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    ||||||||||||| |||||||||||||| || |||||| |||||| ||||||| ||||| || | ||| |||||||||    
T  6474360 gaccaaattgatataaattatagttaggggatcaaattgagacaatcaattaagttaagggatccggtaattgaataa 6474283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 47373717 - 47373810
Alignment:
Q  130 caaaacatatga--ccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataaacctt 222  Q
    ||||||||||||  | |||||| ||||||||||| ||||| ||||||||| |||||| ||||||| ||||| ||||  |||||| ||||||||||    
T  47373717 caaaacatatgagactaaattggtacaaattataattaggggaccaaattgagacaatcaattaagttaagggacc-tgtgattaaataaacctt 47373810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 47373725 - 47373665
Alignment:
Q  18 tatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaac 79  Q
    ||||||||| |  |||||||||||||||||||| ||||||||||||| | ||||||||||||    
T  47373725 tatgttttgatgtgttactagttttaatcctttatgttagtttctctta-aaaaacgttaac 47373665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 28715916 - 28715848
Alignment:
Q  8 atttggtcc-ctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgt 75  Q
    ||||||||| ||| ||||||||  || |||||||||| || ||||||||||||||||||| ||||||||    
T  28715916 atttggtcctctaagttttgctcagtcactagttttagtcatttctgttagtttctctcaaaaaaacgt 28715848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 41986123 - 41986079
Alignment:
Q  68 aaaaacgttaacttatgtaccaatttggtcccttatattttgctc 112  Q
    ||||| |||||||||||||||||||||||||| ||| ||||||||    
T  41986123 aaaaaggttaacttatgtaccaatttggtcccctatgttttgctc 41986079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 30862284 - 30862323
Alignment:
Q  83 tgtaccaatttggtcccttatattttgctctgttactagt 122  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  30862284 tgtaccaatttggtcccctatattttgctttgttactagt 30862323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 30862501 - 30862464
Alignment:
Q  83 tgtaccaatttggtcccttatattttgctctgttacta 120  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  30862501 tgtatcaatttggtcccttatgttttgctctgttacta 30862464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 39161369 - 39161475
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccttatattttgctctg 114  Q
    ||||||||||||||||||||||||||||| |||||||||  ||||||||||| |||||| ||||||||||||||||||||||||| ||| ||||| || |    
T  39161369 ccctatgttttgcttcgttactagttttagtcctttctgaaagtttctctca-aaaaacattaacttatgtaccaatttggtcccatatgttttgatccg 39161467  T
Q  115 ttactagt 122  Q
    || |||||    
T  39161468 ttcctagt 39161475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 47096879 - 47096963
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtccc 99  Q
    |||||||||||||||||||||| |||||| |||||| |||| ||||||||   |||||| |||||||||||||||||||||||||    
T  47096879 ccctatgttttgcttcgttacttgttttagtcctttatgtttgtttctctacaaaaaactttaacttatgtaccaatttggtccc 47096963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 50509395 - 50509472
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||| ||||||||||||||||| |||||||||||||||| ||||||| ||||| || ||| |||||||||||    
T  50509395 gaccaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggatcagatgattgaataa 50509472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 55173520 - 55173597
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||| |||||||||||||||||||| |||||| |||||| ||||||| ||||| |||| |||||||||||||    
T  55173520 gaccaaattggtacaaattatagttaggagatcaaattgagacaatcaattaagttaagggaccgggtgattgaataa 55173597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 37996145 - 37996065
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataaacc 220  Q
    |||||||||||||||||||||||||| | ||||||||| | |||| || || ||||||| || ||||||||||||||||||    
T  37996145 gaccaaattgatacaaattatagttaagggaccaaattgaaacaatcattttaattaagggatcaggtgattgaataaacc 37996065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 50509280 - 50509356
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaacttatgtaccaat 91  Q
    |||||| |||||||| |||| || ||||| || ||||||||||||||| ||| ||||||||||||||||||||||||    
T  50509280 ccctatattttgctttgttattaattttagtcttttctgttagtttctttcaaaaaaacgttaacttatgtaccaat 50509356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 39161393 - 39161291
Alignment:
Q  117 actagtaattaagcaaaacatatg--accaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaa 214  Q
    ||||||||  |||||||||||| |  ||||||||| ||||||||||||||||| |||||||||||||||  ||||||| ||||  || | ||||||||||    
T  39161393 actagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattaagacattcaattaagttaaaggatcgggtgattgaa 39161294  T
Q  215 taa 217  Q
    |||    
T  39161293 taa 39161291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 55173414 - 55173356
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaag 198  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |||||    
T  55173414 gaccaaattaatacaaattatagttaggggaccaaattaagacaatcaattaagttaag 55173356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 39161551 - 39161493
Alignment:
Q  17 ctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgt 75  Q
    |||||||||||| ||||| |||||||| |||||||||||||||||||||  ||||||||    
T  39161551 ctatgttttgctccgttattagttttagtcctttctgttagtttctctcgaaaaaacgt 39161493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 47097054 - 47097141
Alignment:
Q  129 gcaaaacatatgaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||| || ||||||| ||||||||||||||||  ||| ||||| |||||| ||||||| |||||||| | | |||||||||||    
T  47097054 gcaaaacata-gatcaaattggtacaaattatagttagaggactaaattgagacaatcaattaagttaagagatcggatgattgaataa 47097141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 39161558 - 39161612
Alignment:
Q  144 aaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaag 198  Q
    |||||| ||||||||||||||||| ||||||||||| |||| ||||||| |||||    
T  39161558 aaattggtacaaattatagttaggggaccaaattaaaacaatcaattaagttaag 39161612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 47096876 - 47096803
Alignment:
Q  143 caaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    ||||||| |||||||||| |||||| ||||||||| ||| || ||||||| ||||| || |||||||||||||||    
T  47096876 caaattggtacaaattat-gttaggggaccaaattgagataatcaattaagttaagggatcaggtgattgaataa 47096803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 37996146 - 37996210
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaaacgttaac 79  Q
    ||||||||||||||| |||| |||||||| || ||| | ||||||||||| | ||||||||||||    
T  37996146 ccctatgttttgctttgttattagttttagtcttttttattagtttctctaaaaaaaacgttaac 37996210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 47097064 - 47097001
Alignment:
Q  17 ctatgttttgcttcgttactagttttaatcctttctgttagtttctct-cataaaaacgttaac 79  Q
    |||||||||||  |||||||||||||| || ||| ||||||||||||| || ||||||||||||    
T  47097064 ctatgttttgccccgttactagttttagtcatttttgttagtttctctccaaaaaaacgttaac 47097001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 47096963 - 47097004
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgtta 56  Q
    |||||||||||||| | |||||||||||| ||||||||||||    
T  47096963 ccctatgttttgctccattactagttttagtcctttctgtta 47097004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 55173416 - 55173457
Alignment:
Q  15 ccctatgttttgcttcgttactagttttaatcctttctgtta 56  Q
    |||||| ||||||| |||||||||||||| ||||||||||||    
T  55173416 ccctatattttgctccgttactagttttagtcctttctgtta 55173457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 22975 - 23054
Alignment:
Q  143 caaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataaacctt 222  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||| ||||| |||| ||||||||||||| ||||    
T  22975 caaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtgattgaataagcctt 23054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 22969 - 22915
Alignment:
Q  17 ctatgttttgcttcgttactagttttaatcctttctgttagtttctctcataaaa 71  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||| ||||    
T  22969 ctatgttttgctccgttactagttttagtcctttctgttagtttctctcaaaaaa 22915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 5302 - 5379
Alignment:
Q  140 gaccaaattgatacaaattatagttaggagaccaaattaagacaaacaattaaattaagagaccaggtgattgaataa 217  Q
    |||||||||| ||||||||||||||||| ||||||||| |||||| ||||||| ||||| |||| | |||||||||||    
T  5302 gaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataa 5379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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