View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3167_high_7 (Length: 250)
Name: NF3167_high_7
Description: NF3167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3167_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 36939466 - 36939702
Alignment:
| Q |
1 |
tgctaccacaggaagagctagtaaagaaacagacgtgtatagttttggtattgttgctttagagatagcttgcggaagaaaacctataataaaccttaag |
100 |
Q |
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| T |
36939466 |
tgctaccacaggaagagctagtaaagaaacagacgtgtatagttttggtattgttgctttagagatagcttgcggaagaaaacctataataaaccttaag |
36939565 |
T |
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| Q |
101 |
gctcaagaaaatgaaatacatattgtggagtgggtttgggggctatatggaagagggaaaattcttgaagcagtagatccaaaactagatggagattttg |
200 |
Q |
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| T |
36939566 |
gctcaagaaaatgaaatacatattgtggagtgggtttgggggctatatggaagagggaaaattcttgaagcagtagatccaaaactagatggagattttg |
36939665 |
T |
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| Q |
201 |
aacaagaacaaatcaagtgcatgatgattgttggtct |
237 |
Q |
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| T |
36939666 |
aacaagaacaaatcaagtgcatgatgattgttggtct |
36939702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 36941652 - 36941422
Alignment:
| Q |
1 |
tgctaccacaggaagagctagtaaagaaacagacgtgtatagttttggtattgttgctttagagatagcttgcggaagaaaacctataataaaccttaag |
100 |
Q |
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||||||||||||||| || ||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||| |
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| T |
36941652 |
tgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaaaccaataat------taat |
36941559 |
T |
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| Q |
101 |
gctcaagaaaatgaaatacatattgtggagtgggtttgggggctatatggaagagggaaaattcttgaagcagtagatccaaaactagatggagattttg |
200 |
Q |
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| T |
36941558 |
gctcaagaaaatgaaataaacattgtggaatgggtttgggggctatatggaagagggagaattgttgaagcagtagatccaagactagatggagattatg |
36941459 |
T |
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| Q |
201 |
aacaagaacaaatcaagtgcatgatgattgttggtct |
237 |
Q |
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|| | |||||||||||||||||||||||||||||||| |
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| T |
36941458 |
aagaggaacaaatcaagtgcatgatgattgttggtct |
36941422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 3054491 - 3054432
Alignment:
| Q |
10 |
aggaagagctagtaaagaaacagacgtgtatagttttggtattgttgctttagagatagc |
69 |
Q |
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|||||| |||||||||||| | ||| ||||||||||||| ||||||||||| ||| |||| |
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| T |
3054491 |
aggaagggctagtaaagaatctgacatgtatagttttggaattgttgctttggagctagc |
3054432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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