View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3167_low_2 (Length: 395)
Name: NF3167_low_2
Description: NF3167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3167_low_2 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 36938944 - 36939322
Alignment:
| Q |
1 |
taatgatttcaaagacgagtataagctaggacaaggaggatttggaggtgtttatagaggttttcttaaagacacaaaatcttacgttgctattaagagg |
100 |
Q |
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| T |
36938944 |
taatgatttcaaagacgagtataagctaggacaaggaggatttggaggtgtttatagaggttttcttaaagacacaaaatcttatgttgctgttaagagg |
36939043 |
T |
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| Q |
101 |
gtgtcagaagattcacatcaagggataaaagagttcgcatcagaagtaacaactattagcaaattaaggcatagaaatctagtgcaattgattggttggt |
200 |
Q |
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| T |
36939044 |
gtgtcagaagattcacatcaaggaataaaggagttcgcatcagaagtaacaattattagcaaattaaggcatagaaatctagtgcaattgattggttggt |
36939143 |
T |
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| Q |
201 |
gtcatgaaagaaaaaagcttttacttgtatatgagtacatgccaaatggtagtttagacattcatcttttcaaaaatcaaagtttctcgaaatggggtgt |
300 |
Q |
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| T |
36939144 |
gtcatgaaagaaaaaagcttttacttgtatatgagtacatgccaaatggtagtttagacattcatcttttcaaaaatcaaagtttcttgaaatggggtgt |
36939243 |
T |
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| Q |
301 |
tagatatacaatagctagaggcttggcttctgcactgttatatttgcatgaagaatgggaacaatgtgttgtacataga |
379 |
Q |
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| T |
36939244 |
tagatatacaatagctagaggcttggcttctgcactgttatatttgcatgaagaatgggaacaatgtgttgtacataga |
36939322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 36942174 - 36941796
Alignment:
| Q |
1 |
taatgatttcaaagacgagtataagctaggacaaggaggatttggaggtgtttatagaggttttcttaaagacacaaaatcttacgttgctattaagagg |
100 |
Q |
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|||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |
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| T |
36942174 |
taataatttcaaagatgagcataagctaggacaaggaggatttggaggtgtttatagaggctttctaaaagacacaaaatcttatgttgctattaagagt |
36942075 |
T |
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| Q |
101 |
gtgtcagaagattcacatcaagggataaaagagttcgcatcagaagtaacaactattagcaaattaaggcatagaaatctagtgcaattgattggttggt |
200 |
Q |
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| T |
36942074 |
gtgtcagaagattctcatcaagggataaaggaatttgcatcagaagtaacgataattagcaaattaaggcatagaaatctagtgcaattgattggttggt |
36941975 |
T |
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| Q |
201 |
gtcatgaaagaaaaaagcttttacttgtatatgagtacatgccaaatggtagtttagacattcatcttttcaaaaatcaaagtttctcgaaatggggtgt |
300 |
Q |
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| T |
36941974 |
gtcatcaaaggaaaaaactcttgcttgtgtatgagtacatgccaaatggtagtttagacattcatcttttcaagaaacaaagtttgttgaaatggggtgt |
36941875 |
T |
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| Q |
301 |
tagatatacaatagctagaggcttggcttctgcactgttatatttgcatgaagaatgggaacaatgtgttgtacataga |
379 |
Q |
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| T |
36941874 |
tagatatacaatagctaaaggcttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacataga |
36941796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 19222 - 19153
Alignment:
| Q |
191 |
attggttggtgtcatgaaagaaaaaagcttttacttgtatatgagtacatgccaaatggtagtttagaca |
260 |
Q |
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| T |
19222 |
attggttggtgctatgaaagtaaagagcttctccttgtttatgagttcatgccaaatggaagtttagaca |
19153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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