View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3167_low_4 (Length: 302)
Name: NF3167_low_4
Description: NF3167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3167_low_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 126 - 302
Target Start/End: Complemental strand, 28565430 - 28565254
Alignment:
| Q |
126 |
tttagaaagaaaatatgaaatccctattttaaatctgtcactaaatttataagtgacgaagaaattaaagataaattttcaattttccatcacaaacttg |
225 |
Q |
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| T |
28565430 |
tttaaaaagaaaatatgaaatccctattttaaatctgtcactaaatttataagtgacgaagaaattaaagataaattttcaattttccatcacaatcttg |
28565331 |
T |
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| Q |
226 |
gtcgttaattctaattttctagaagtgacatacgattagatctagtattctaatatgccatgaagagcaggccaatc |
302 |
Q |
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| T |
28565330 |
gtcattaattctaattttctagaagtgacatacgattagatctagtattttaatatgccatgaagagcaggccaatc |
28565254 |
T |
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Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 299
Target Start/End: Complemental strand, 28560497 - 28560216
Alignment:
| Q |
7 |
ggagcagagagtaaacagcaataacatgagtttccacatacatgtatgcgtgatgagcatgaacatatacagagccaatgtaagcacttctagaataaaa |
106 |
Q |
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| T |
28560497 |
ggagcagaaagtaaacagcaataacatgagtttccacat----gtatgcgtgatgagcatgaacatatacagaaccaaagtaagcacttctagaataaaa |
28560402 |
T |
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| Q |
107 |
atgaaattagtgaacaaaatttagaaagaaaatatgaaatccctattttaaatctgtcactaaatttataagtgacgaagaaattaaagataaattttca |
206 |
Q |
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| T |
28560401 |
attaatgatgt----aaattttagaaagaaaatatgaaatctct-ttctaattctgtcactaaattt---agtgacaaataaattagagagaaa-tttca |
28560311 |
T |
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| Q |
207 |
--attttccatca-caaacttggtcgttaattctaattttctagaagtgacatacgattagatctagtattctaatatgccatgaagagcaggcca |
299 |
Q |
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| T |
28560310 |
tttttttcaatcattaatcttggtcattaattat-attttctagaagtgacatacaattagatctagaagttcaatagaccttgaagagcaggcca |
28560216 |
T |
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