View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3167_low_5 (Length: 299)
Name: NF3167_low_5
Description: NF3167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3167_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 4276096 - 4276367
Alignment:
| Q |
17 |
actatatgtccagtatgattcttacaaatccagcatgaaaccaaatatgcacacatttgtttaatatctcatgtgcactaaaatggtaagcaaagtaatt |
116 |
Q |
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| T |
4276096 |
actatatgtccagtatgattcttacaaatccagcatgaaaccaaatatgcacacatttgtttaatatctcatgtgcactaaaatggtaagcaaagtaatt |
4276195 |
T |
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| Q |
117 |
aaaactaaatgggagtacgtcgcattaaagtttgaaacaaatcatttatttattcttaaataaaaatgattttttatctttctaaatgacgacaatatta |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4276196 |
aaaactaaatgggagtacgttgcattaaagtttgaaacaaatcatttatttattcttaaataaaaatgattttttatctttctaaatgacgacaatatta |
4276295 |
T |
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| Q |
217 |
gatcnnnnnnnnnnnnnnnnnnaagggaatattagatctttattgatctttcgtttaaaacacaaatagcattattt |
293 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4276296 |
gatc-----tttattttttttgaagggaatattagatctttattgatcttccgtttaaaacacaaatagcattattt |
4276367 |
T |
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