View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3167_low_8 (Length: 240)

Name: NF3167_low_8
Description: NF3167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3167_low_8
NF3167_low_8
[»] chr2 (3 HSPs)
chr2 (1-233)||(4276373-4276606)
chr2 (2-87)||(12564933-12565018)
chr2 (3-81)||(355564-355642)
[»] chr8 (3 HSPs)
chr8 (1-88)||(23447752-23447839)
chr8 (1-54)||(25320195-25320248)
chr8 (11-54)||(19752886-19752929)
[»] chr3 (2 HSPs)
chr3 (2-88)||(47772701-47772787)
chr3 (1-54)||(1233174-1233227)
[»] chr6 (3 HSPs)
chr6 (3-87)||(13413451-13413535)
chr6 (9-54)||(17798858-17798903)
chr6 (5-71)||(31292747-31292811)
[»] chr4 (2 HSPs)
chr4 (3-87)||(49194384-49194468)
chr4 (1-54)||(43040687-43040740)
[»] chr7 (2 HSPs)
chr7 (2-71)||(7634821-7634890)
chr7 (1-54)||(25987515-25987567)
[»] chr5 (1 HSPs)
chr5 (3-51)||(10460555-10460603)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4276606 - 4276373
Alignment:
Q  1 atatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctcccaacacccgtcgaatgttcaagttctgaaat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4276606 atatttgaatcgcaaaggcgactccccgacccaatgatcataccaaaataaagtaccatgaccatctcccaacacccgtcgaatgttcaagttctgaaat 4276507  T
Q  101 aagaccaaagtgtca-nnnnnnnnnnggtaacaaccaaagtgtcatttgatttctaaaataataaatactacgtatatgacaaactatattttaaaagaa 199  Q
    |||||||||||||||           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4276506 aagaccaaagtgtcatctttttttttggtaacaaccaaagtgtcatctgatttctaaaataataaatactacgtatatgacaaactatattttaaaagaa 4276407  T
Q  200 gacttaaataatgctatttgtcttgtaccaaaaa 233  Q
    ||||||||||||||||||||||||||||||||||    
T  4276406 gacttaaataatgctatttgtcttgtaccaaaaa 4276373  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 12564933 - 12565018
Alignment:
Q  2 tatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctcccaacacccgtcgaatgtt 87  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||    
T  12564933 tatttgaatcgcaatggcgactccccgacccaatgatcataccaaaataaagtaccaagaccatctctcaccacccgtcgaatgtt 12565018  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 355642 - 355564
Alignment:
Q  3 atttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctcccaacacccgtcg 81  Q
    |||| |||||||||||| | ||||||||||||| |||| ||||||||||||||  |  |||||||||||  ||||||||    
T  355642 atttaaatcgcaaaggcaattccccaacccaattatcaaaccaaaataaagtagtagaaccatctcccacaacccgtcg 355564  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 23447752 - 23447839
Alignment:
Q  1 atatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctcccaacacccgtcgaatgttc 88  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  23447752 atatttgaatcgcaaaggcgagtccccgacccaatgatcataccaaaataaagtaccttgaccatctcccaccatccgtcgaatgttc 23447839  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25320195 - 25320248
Alignment:
Q  1 atatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagt 54  Q
    ||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  25320195 atatttgtatcgcaaaggcgactccccgacccaatgatcatgccaaaataaagt 25320248  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 19752929 - 19752886
Alignment:
Q  11 cgcaaaggcgactccccaacccaatgatcataccaaaataaagt 54  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  19752929 cgcaaaggcgactccccaacccaatgatcatgccaaaataaagt 19752886  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 47772701 - 47772787
Alignment:
Q  2 tatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctcccaacacccgtcgaatgttc 88  Q
    |||||||||||||| ||||||||||| ||||||| ||||| |||||||||||||| | |||||||||||| ||||||||||||||||    
T  47772701 tatttgaatcgcaatggcgactccccgacccaattatcatgccaaaataaagtactaagaccatctcccaccacccgtcgaatgttc 47772787  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1233227 - 1233174
Alignment:
Q  1 atatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagt 54  Q
    ||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  1233227 atatttgcatcgcaaaggcgactccccgacccaatgatcatgccaaaataaagt 1233174  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 13413451 - 13413535
Alignment:
Q  3 atttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctcccaacacccgtcgaatgtt 87  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||| | || ||  |||||||||| |||||| || |||||    
T  13413451 atttgaatcgcaaaggcgactccccaacccaatgatcgaaccaaaataaggcactatttccatctcccaccacccgacggatgtt 13413535  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 17798858 - 17798903
Alignment:
Q  9 atcgcaaaggcgactccccaacccaatgatcataccaaaataaagt 54  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  17798858 atcgcaaaggcgactccccgacccaatgatcatgccaaaataaagt 17798903  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 31292811 - 31292747
Alignment:
Q  5 ttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctccca 71  Q
    ||||||||||||||||| |||||||||||||||||  |||| |  ||||||| | ||||||||||||    
T  31292811 ttgaatcgcaaaggcgattccccaacccaatgatctaaccaga--aaagtactacgaccatctccca 31292747  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 49194384 - 49194468
Alignment:
Q  3 atttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctcccaacacccgtcgaatgtt 87  Q
    |||||| |||||||||||| ||||| |||||||||||  |||||||| | |||| | ||||||||||||  ||||||||||||||    
T  49194384 atttgagtcgcaaaggcgaatccccgacccaatgatcgaaccaaaatgaggtactacgaccatctcccacaacccgtcgaatgtt 49194468  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43040740 - 43040687
Alignment:
Q  1 atatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagt 54  Q
    ||||||| ||||||||||||||| ||| ||||||||||||| ||||||||||||    
T  43040740 atatttgtatcgcaaaggcgacttcccgacccaatgatcatgccaaaataaagt 43040687  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 7634890 - 7634821
Alignment:
Q  2 tatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagtaccatgaccatctccca 71  Q
    |||||||||||||| ||||||||||| ||| ||||||||| | |||||||||||  | ||||||||||||    
T  7634890 tatttgaatcgcaatggcgactccccgaccgaatgatcatgctaaaataaagtattaagaccatctccca 7634821  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 25987567 - 25987515
Alignment:
Q  1 atatttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataaagt 54  Q
    ||||||| |||||||||||||||||| | |||||||||||| ||||||||||||    
T  25987567 atatttgtatcgcaaaggcgactcccga-cccaatgatcatgccaaaataaagt 25987515  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 10460555 - 10460603
Alignment:
Q  3 atttgaatcgcaaaggcgactccccaacccaatgatcataccaaaataa 51  Q
    |||| |||||||||||||| ||||||| |||||||||| ||||||||||    
T  10460555 atttaaatcgcaaaggcgagtccccaatccaatgatcaaaccaaaataa 10460603  T

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