View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3168_high_1 (Length: 419)
Name: NF3168_high_1
Description: NF3168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3168_high_1 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 403
Target Start/End: Original strand, 2797304 - 2797695
Alignment:
| Q |
12 |
agagagacggacaatagaagatggcatgatcctcggttgtcttcccttttcattgaagaaactgcaattgttggatttgaaggcccaagggaagaattgt |
111 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
2797304 |
agagagacggataatagaagatggtgtgatcctcgactgtcttccctttttattgaagaaactgcaattgtcggatttgaaggcccgagggaagaattgt |
2797403 |
T |
|
| Q |
112 |
ctggttggttattggagggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacag |
211 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2797404 |
ctggttggttactagagggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacag |
2797503 |
T |
|
| Q |
212 |
tcaaaaggtaacaacaaaatttgattgtcgtgcttgcatcaccgtttctcaatcatacaccgtgagggggatattgatcaacatgatggaggaattttgc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2797504 |
tcaaaaggtaacaacaaaatttgattgtcgtgcttgcatcacagtttctcaatcatacaccgtgagggggatattgatcaacatgatggaggaattttgt |
2797603 |
T |
|
| Q |
312 |
agcgaaactgaaggccctcttttgcagatgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaa |
403 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
2797604 |
agcgaaactgaaagccctcttttgcagatgttacacaaaatggatgacaagtcattgattatacaagtgaggcaatacctgcaacataaaaa |
2797695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 400
Target Start/End: Complemental strand, 2856004 - 2855617
Alignment:
| Q |
13 |
gagagacggacaatagaagatggcatgatcctcggttgtcttcccttttcattgaagaaactgcaattgttggatttgaaggcccaagggaagaattgtc |
112 |
Q |
| |
|
||||||| || ||| ||||||||| ||||||||| ||||||||||||||||||||||||| | | |||| || |||||||||||| ||||||||||| |
|
|
| T |
2856004 |
gagagacagaaaatggaagatggcgtgatcctcgactgtcttcccttttcattgaagaaacagaagttgtaggcattgaaggcccaaaagaagaattgtc |
2855905 |
T |
|
| Q |
113 |
tggttggttattggagggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagt |
212 |
Q |
| |
|
||||||||||||||| || | | ||||||||| ||||||||||||||| |||||||| ||| |||||||||| ||||||||||||||| |||| ||||| |
|
|
| T |
2855904 |
tggttggttattggaaggtatatctgagcgcaaagtgatttcagtggtgggaatggggggtataggaaaaactactcttgccaagctaatttttgacagc |
2855805 |
T |
|
| Q |
213 |
caaaaggtaacaacaaaatttgattgtcgtgcttgcatcaccgtttctcaatcatacaccgtgagggggatattgatcaacatgatggaggaattttgca |
312 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || | ||||| |||||||||||| ||||||| |
|
|
| T |
2855804 |
caaaaggtaacaacaaactttgattgtcgtgcttgcatcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttgtc |
2855705 |
T |
|
| Q |
313 |
gcgaaactgaaggccctcttttgcagatgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataa |
400 |
Q |
| |
|
| | |||||||| ||||||| | |||||| ||||||||||||||| ||||||| ||| ||||||| |||||||||||| ||||||| |
|
|
| T |
2855704 |
ggggaactgaagaccctcttccactgatgttgcacaaaatggatgaccagtcactgattatacaagtaaggcaatacctgcaacataa |
2855617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 2790310 - 2790491
Alignment:
| Q |
12 |
agagagacggacaatagaagatggcatgatcctcggttgtcttcccttttcattgaagaaactgcaattgttggatttgaaggcccaagggaagaattgt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
2790310 |
agagagacggacaatagaagatggcatgatcctcggttgtcttcccttttcattgaagaaactgcaattgtcggatttgaaggcccgagggaagaattgt |
2790409 |
T |
|
| Q |
112 |
ctggttggttattggagggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgc |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2790410 |
ctggttggttattggagggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgc |
2790491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 28 - 400
Target Start/End: Complemental strand, 2838779 - 2838407
Alignment:
| Q |
28 |
gaagatggcatgatcctcggttgtcttcccttttcattgaagaaactgcaattgttggatttgaaggcccaagggaagaattgtctggttggttattgga |
127 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||||||||||| | |||||| ||||||||||||||||| |||||| | | ||||||||||||||| |
|
|
| T |
2838779 |
gaagatggcacgaccctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttggttattgga |
2838680 |
T |
|
| Q |
128 |
gggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggtaacaaca |
227 |
Q |
| |
|
||| |||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||| || |
|
|
| T |
2838679 |
gggtgcagctgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaaggtaacagca |
2838580 |
T |
|
| Q |
228 |
aaatttgattgtcgtgcttgcatcaccgtttctcaatcatacaccgtgagggggatattgatcaacatgatggaggaattttgcagcgaaactgaaggcc |
327 |
Q |
| |
|
|| ||||||||| ||||||| |||| ||||||||||||||||| ||||| || | ||||| |||||||||||| ||||||| | | |||||||| || |
|
|
| T |
2838579 |
aactttgattgttatgcttgcgtcacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttgtcggggaactgaagacc |
2838480 |
T |
|
| Q |
328 |
ctcttttgcagatgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataa |
400 |
Q |
| |
|
||||| |||||||| ||||||| ||||||| ||||||| ||| | |||||||||||||||| ||||||| |
|
|
| T |
2838479 |
ctcttccacagatgttgcacaaaaaggatgaccagtcactgattgaagaagtgaggcaatacctccaacataa |
2838407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 12 - 400
Target Start/End: Original strand, 2807210 - 2807598
Alignment:
| Q |
12 |
agagagacggacaatagaagatggcatgatcctcggttgtcttcccttttcattgaagaaactgcaattgttggatttgaaggcccaagggaagaattgt |
111 |
Q |
| |
|
|||||||| || ||| ||||||||| ||||||||| ||||||||||||| |||||||||| | |||||| ||||||||| |||||| |||||| ||| |
|
|
| T |
2807210 |
agagagacagaaaatggaagatggcgtgatcctcgactgtcttccctttttattgaagaaagagaaattgtaggatttgaattcccaagagaagaaatgt |
2807309 |
T |
|
| Q |
112 |
ctggttggttattggagggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacag |
211 |
Q |
| |
|
||| ||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
2807310 |
ctgtttggttattggagggtgtagctgagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttgatag |
2807409 |
T |
|
| Q |
212 |
tcaaaaggtaacaacaaaatttgattgtcgtgcttgcatcaccgtttctcaatcatacaccgtgagggggatattgatcaacatgatggaggaattttg- |
310 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||||||||| | ||||||||||||||||| ||||| ||| | |||| |||||||||||| ||||||| |
|
|
| T |
2807410 |
ccaaacggtaacaacacactttgattgtcgtgcttgcatcgcagtttctcaatcatacactgtgagagggttgatgataaacatgatggagcaattttgt |
2807509 |
T |
|
| Q |
311 |
cagcgaaactgaaggccctcttttgcagatgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataa |
400 |
Q |
| |
|
||| |||||||||| ||||||| | | ||||| |||| |||||||||| ||||| ||| || ||||||||||||||||| ||||||| |
|
|
| T |
2807510 |
cag-gaaactgaagaccctcttccaaataagttacgcaaattggatgacaaatcactgattgtagaagtgaggcaatacctgcaacataa |
2807598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 28 - 367
Target Start/End: Original strand, 2769028 - 2769367
Alignment:
| Q |
28 |
gaagatggcatgatcctcggttgtcttcccttttcattgaagaaactgcaattgttggatttgaaggcccaagggaagaattgtctggttggttattgga |
127 |
Q |
| |
|
||||||||| |||||||||| |||||||||| || ||||||||||| | |||||| ||||| ||||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
2769028 |
gaagatggcgtgatcctcggatgtcttccctctttattgaagaaacagaaattgtaggattggaaggcccaagagaagaattatttggttggttattgga |
2769127 |
T |
|
| Q |
128 |
gggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggtaacaaca |
227 |
Q |
| |
|
||| ||||| ||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||||| || |
|
|
| T |
2769128 |
gggtgcagctaagcgcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaaactagtttatgacagccaaaaggtaactgca |
2769227 |
T |
|
| Q |
228 |
aaatttgattgtcgtgcttgcatcaccgtttctcaatcatacaccgtgagggggatattgatcaacatgatggaggaattttg-cagcgaaactgaaggc |
326 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| || |||| || ||||||||| ||||||| ||| |||||||||| |
|
|
| T |
2769228 |
aactttgattgtcgtgcttgcatcacagtttctcaatcatacactgtgagagggttactgataaaaatgatggagcaattttgtcag-gaaactgaagaa |
2769326 |
T |
|
| Q |
327 |
cctcttttgcagatgttacacaaaatggatgacaagtcact |
367 |
Q |
| |
|
||||| | |||||||||||||||||||||||| |||||| |
|
|
| T |
2769327 |
cctctgctaaagatgttacacaaaatggatgacatgtcact |
2769367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 240 - 403
Target Start/End: Original strand, 2790491 - 2790654
Alignment:
| Q |
240 |
cgtgcttgcatcaccgtttctcaatcatacaccgtgagggggatattgatcaacatgatggaggaattttgcagcgaaactgaaggccctcttttgcaga |
339 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2790491 |
cgtgcttgcatcaccgtttctcaatcattcaccgtgagggggatattgatcaacatgatggaggaattttgtagcgaaactgaaggccctcttttgcaga |
2790590 |
T |
|
| Q |
340 |
tgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2790591 |
tgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataaaaa |
2790654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 28 - 367
Target Start/End: Original strand, 2759173 - 2759512
Alignment:
| Q |
28 |
gaagatggcatgatcctcggttgtcttcccttttcattgaagaaactgcaattgttggatttgaaggcccaagggaagaattgtctggttggttattgga |
127 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||| | |||||| |||||||||||||||| |||||| | | ||||||||||||||| |
|
|
| T |
2759173 |
gaagatggcgtgatcctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaaaagaagaactatatggttggttattgga |
2759272 |
T |
|
| Q |
128 |
gggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggtaacaaca |
227 |
Q |
| |
|
||| ||||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
2759273 |
gggttcagctgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgccaagctagtttttgacagccaaaaggtaacaaca |
2759372 |
T |
|
| Q |
228 |
aaatttgattgtcgtgcttgcatcaccgtttctcaatcatacaccgtgagggggatattgatcaacatgatggaggaattttg-cagcgaaactgaaggc |
326 |
Q |
| |
|
| |||||||||| ||||||||| ||||||||||||||||| ||||| || || |||| || ||||||| | ||||||| ||| |||||||||| | |
|
|
| T |
2759373 |
cagtttgattgtcaagcttgcatcgtagtttctcaatcatacactgtgagaggattactgataaaaatgatggcgcaattttgtcag-gaaactgaagac |
2759471 |
T |
|
| Q |
327 |
cctcttttgcagatgttacacaaaatggatgacaagtcact |
367 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| |||||| |
|
|
| T |
2759472 |
cctcttccaaagaagttacacaaaatggatgacaggtcact |
2759512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 32 - 400
Target Start/End: Original strand, 2748958 - 2749326
Alignment:
| Q |
32 |
atggcatgatcctcggttgtcttcccttttcattgaagaaactgcaattgttggatttgaaggcccaagggaagaattgtctggttggttattggagggc |
131 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||||||||| | | ||||||| |||||| ||||| |||||| ||||||||||||||||||| || |
|
|
| T |
2748958 |
atggcatgatcctcgactgtcttctctttttattgaagaaacagaagttgttggtattgaagtcccaaaagaagaactgtctggttggttattggatggt |
2749057 |
T |
|
| Q |
132 |
acagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggtaacaacaaaat |
231 |
Q |
| |
|
|||||||||||| ||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||| || || |||||||| || || | | |
|
|
| T |
2749058 |
gaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaaaaaggtatcagcacact |
2749157 |
T |
|
| Q |
232 |
ttgattgtcgtgcttgcatcaccgtttctcaatcatacaccgtgagggggatattgatcaacatgatggaggaattttgcagcgaaactgaaggccctct |
331 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| ||||| ||||| || | ||||| |||||||||||| |||| || | ||| ||| | |||| |
|
|
| T |
2749158 |
ttgattgtcgtgcttgcgtcacagtttctcaatcttacactgtgagaggtttgttgataaacatgatggagcaattctgtcggagtactaaagactctct |
2749257 |
T |
|
| Q |
332 |
tttgcagatgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataa |
400 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||| ||| || ||||||||||||||||| ||||||| |
|
|
| T |
2749258 |
tctgcagatgttacacaaaatggatgaccagtcactaattatagaagtgaggcaatacctgcaacataa |
2749326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 12 - 400
Target Start/End: Original strand, 5412829 - 5413217
Alignment:
| Q |
12 |
agagagacggacaatagaagatggcatgatcctcggttgtcttcccttttcattgaagaaactgcaattgttggatttgaaggcccaagggaagaattgt |
111 |
Q |
| |
|
|||||||| || ||| ||||||||| |||||||| |||||||||| |||||| |||||| | | |||| ||| ||||||| |||| |||||||||| |
|
|
| T |
5412829 |
agagagacagaaaatggaagatggcgagatcctcgactgtcttccctattcattacagaaacagaagttgtaggaattgaaggtccaaaagaagaattgt |
5412928 |
T |
|
| Q |
112 |
ctggttggttattggagggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacag |
211 |
Q |
| |
|
|||||||||||||||| || |||| || || ||||| || |||||||| |||||||| || |||||||||||||||||||||||||||||||| || || |
|
|
| T |
5412929 |
ctggttggttattggatggtgcagcggaacgtacagtcatatcagtggtaggaatggggggcctaggaaaaaccactcttgccaagctagtttttgaaag |
5413028 |
T |
|
| Q |
212 |
tcaaaaggtaacaacaaaatttgattgtcgtgcttgcatcaccgtttctcaatcatacaccgtgagggggatattgatcaacatgatggaggaattttgc |
311 |
Q |
| |
|
||||||||| || || | ||||||||| |||||||| | || ||||||||||||||||| ||||| || | ||||| |||||||||||| ||||||| |
|
|
| T |
5413029 |
ccaaaaggtatcagcacactttgattgttgtgcttgcgtaacagtttctcaatcatacactgtgagaggtttgttgataaacatgatggagcaattttgt |
5413128 |
T |
|
| Q |
312 |
agcgaaactgaaggccctcttttgcagatgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataa |
400 |
Q |
| |
|
| | |||||||| | ||||| ||||||||||||||||||||||||| |||||| ||| || ||||||||||||||||| ||||||| |
|
|
| T |
5413129 |
cggggaactgaagactctcttccgcagatgttacacaaaatggatgaccggtcactgattatagaagtgaggcaatacctgcaacataa |
5413217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 31 - 309
Target Start/End: Original strand, 2818519 - 2818797
Alignment:
| Q |
31 |
gatggcatgatcctcggttgtcttcccttttcattgaagaaactgcaattgttggatttgaaggcccaagggaagaattgtctggttggttattggaggg |
130 |
Q |
| |
|
|||||| ||||||||| ||||||| ||||||||||||||||| | ||| || |||||||||||||| || |||||| | | |||||||||||||||||| |
|
|
| T |
2818519 |
gatggcgtgatcctcgactgtcttctcttttcattgaagaaacagaaatcgtaggatttgaaggcccgagagaagaactatatggttggttattggaggg |
2818618 |
T |
|
| Q |
131 |
cacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggtaacaacaaaa |
230 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | |
|
|
| T |
2818619 |
tgcagccgagcgcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgacagccaaaaggtaacaacacag |
2818718 |
T |
|
| Q |
231 |
tttgattgtcgtgcttgcatcaccgtttctcaatcatacaccgtgagggggatattgatcaacatgatggaggaatttt |
309 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||| ||||| || || |||| || ||||||||| |||||| |
|
|
| T |
2818719 |
tttgattgtcgagcttgcatcgtagtttctcaatcatacactgtgagaggattactgataaaaatgatggagcaatttt |
2818797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 21945658 - 21945731
Alignment:
| Q |
138 |
gagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacag |
211 |
Q |
| |
|
|||||||| || |||| ||||| ||||||||||| | ||||||||||||||| |||||| |||||| ||||| |
|
|
| T |
21945658 |
gagcgcactgtagtttccgtggtaggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacag |
21945731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 22368323 - 22368262
Alignment:
| Q |
159 |
gttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggt |
220 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||| |||||| |||| |||||||| |
|
|
| T |
22368323 |
gttggaatgggaggactgggaaaaaccactctagccaagaaagtttttgacaaccaaaaggt |
22368262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 22648590 - 22648533
Alignment:
| Q |
138 |
gagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgcca |
195 |
Q |
| |
|
|||||||| || || || ||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
22648590 |
gagcgcactgtcatctctgtggtaggtatgggagggctaggaaaaaccactcttgcca |
22648533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 28 - 400
Target Start/End: Complemental strand, 6331 - 5959
Alignment:
| Q |
28 |
gaagatggcatgatcctcggttgtcttcccttttcattgaagaaactgcaattgttggatttgaaggcccaagggaagaattgtctggttggttattgga |
127 |
Q |
| |
|
||||||||| ||||||||| || ||| ||||||| ||||||||||||| | |||| ||||| ||||||||||| || ||||| | ||||||||||||||| |
|
|
| T |
6331 |
gaagatggcgtgatcctcgattatctgccctttttattgaagaaactgaagttgtaggattcgaaggcccaagagaggaattatatggttggttattgga |
6232 |
T |
|
| Q |
128 |
gggcacagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggtaacaaca |
227 |
Q |
| |
|
| | ||||||||||||| || ||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
6231 |
gagtccagctgagcgcaccgtaatttcagtggtaggaatgggaggtatagggaaaaccactcttgccaagctagtttttgacagccaaaaggtaacaaca |
6132 |
T |
|
| Q |
228 |
aaatttgattgtcgtgcttgcatcaccgtttctcaatcatacaccgtgagggggatattgatcaacatgatggaggaattttgcagcgaaactgaaggcc |
327 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| ||||||||||||| ||| || | || |||||||||||| ||||||| | |||||||||| || |
|
|
| T |
6131 |
caatttgattgtcgtgcttgcatcgcagtttctcaaacatacaccgtgagagggttactcataaacatgatggagcaattttgtcgggaaactgaagacc |
6032 |
T |
|
| Q |
328 |
ctcttttgcagatgttacacaaaatggatgacaagtcactcattctacaagtgaggcaatacctgaaacataa |
400 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||| | ||| || ||||||||||||||||| ||||||| |
|
|
| T |
6031 |
ctcttccgcaaatgttacacaaaatggatgacaagtcattaattatagaagtgaggcaatacctgcaacataa |
5959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University