View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3168_high_2 (Length: 388)
Name: NF3168_high_2
Description: NF3168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3168_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 21 - 372
Target Start/End: Complemental strand, 25777901 - 25777553
Alignment:
| Q |
21 |
tcttatgcatatcctcagatctgcgatattaagtgatgaagaaaatgaggcattgttgttacacttgtaccttctagttgtcggtttctcccacttcacc |
120 |
Q |
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| T |
25777901 |
tcttatgcacatcctcagatctgtgatattaagtgatgaagataatgaggcattgatgttacacttgtaccttctagttgtcggtttctcccacttcacc |
25777802 |
T |
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| Q |
121 |
aaatctcagctgattgagatttgctggttcgtgatcgtagttgttgtactacgagactttaaacactgtgccactcttcaatattcatccttcaagtggg |
220 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
25777801 |
aaatctcagctgattgagatttaccagttcgtgatcgtagttgttgtactacgagactttaaacattgtgccactcttcaatattcatcctgcaagtggg |
25777702 |
T |
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| Q |
221 |
ttgctcatccaattacttgcgtgcttgttttgttctgtttgttgacaaattttcaggtttctgtgtt--cataagctccacaaaaccgtgaaaaaaggtt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
25777701 |
ttgctcatccaattacttgcgtgcttgttttgttctg-ttgttgacaaattttcaggtttctgtgtttccataaactccacaaaaccgtgaaaaaaggtt |
25777603 |
T |
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| Q |
319 |
cactttgacccggagaaagttgatgcaaattaaagagtgaaaaccagagcatct |
372 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25777602 |
cactttgaaccggagaaagttgatgca----aaagagtgaaaaccagagcatct |
25777553 |
T |
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