View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3168_high_3 (Length: 297)

Name: NF3168_high_3
Description: NF3168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3168_high_3
NF3168_high_3
[»] chr3 (12 HSPs)
chr3 (6-297)||(2790041-2790332)
chr3 (13-297)||(2797051-2797326)
chr3 (13-238)||(5412597-5412813)
chr3 (17-297)||(2806955-2807232)
chr3 (6-240)||(2748681-2748906)
chr3 (6-280)||(2768752-2769017)
chr3 (6-240)||(2856040-2856265)
chr3 (6-274)||(2838799-2839055)
chr3 (13-269)||(2758904-2759151)
chr3 (188-237)||(2818413-2818462)
chr3 (13-61)||(2755734-2755782)
chr3 (13-59)||(2818247-2818293)
[»] scaffold0691 (1 HSPs)
scaffold0691 (17-258)||(6364-6596)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 6 - 297
Target Start/End: Original strand, 2790041 - 2790332
Alignment:
Q  6 agcagcagagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatc 105  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2790041 agcagctgagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgccgtcaatc 2790140  T
Q  106 tctattctgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaag 205  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||    
T  2790141 tttattctgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcatctgagattaaaaacattaagatatcaattcgtggaatcaag 2790240  T
Q  206 gaaagaagtgagaggtataactttcaaatttcacagacaccaggatcatcaagcagcagcaacagcagtagagagacggacaatagaagatg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2790241 gaaagaagtgagaggtataactttcaaatttcacagacaccaggatcatcaagcagcagcaacagcagtagagagacggacaatagaagatg 2790332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 2797051 - 2797326
Alignment:
Q  13 gagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatctctattc 112  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||| ||| |||||||||||      | ||||| | |||||| |   |||| || ||    
T  2797051 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcagctgatgcatagggc------ctatcctccgggatgcgg---atctttagtc 2797141  T
Q  113 tgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaaggaaagaa 212  Q
    |||||||||||||| ||||||||||| |||||| ||| ||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2797142 tgcaagattgcaagtctaatcaaaacattgatttcccttcaccagatagcatctgagattaagaacattaagatatcaattcgtggaatcaaggaaagaa 2797241  T
Q  213 gtgagaggtataactttcaaatttcacagacaccaggatcatcaagcagcagcaacagcagtagagagacggacaatagaagatg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  2797242 gtgagaggtataactttcaaatttcacagacaccaggatcatcaagcagcaacaacagcagtagagagacggataatagaagatg 2797326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 5412597 - 5412813
Alignment:
Q  13 gagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatctctattc 112  Q
    |||||||||||||||||||||||||||| |||| || ||||||| |||||| ||||||||||       |||||||  |||||||||   |||| || ||    
T  5412597 gagagaagcatcatttcgcattgaagatgtcattgacgaataccatcggctaatgcatagggt------caatcctcttggatgcag---atctttagtc 5412687  T
Q  113 tgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaaggaaagaa 212  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| || ||||||||   |||||||||||||||||||||||||    
T  5412688 tgcaagattgcaagcttgatcaaaactttgattccccatcatcagatagcatctgagattcaggacattaagttgtcaattcgtggaatcaaggaaagaa 5412787  T
Q  213 gtgagaggtataactttcaaatttca 238  Q
    ||||||||||||||||||||||||||    
T  5412788 gtgagaggtataactttcaaatttca 5412813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 2806955 - 2807232
Alignment:
Q  17 gaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatctctattctgca 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| |||| |||||||| ||  ||||  ||||| ||    
T  2806955 gaagcatcatttcgcattgaagatatcatcgatgaataccatcggctgatgcatatggcaaaatccagtcctcctggatgcggtggatcttcattctaca 2807054  T
Q  117 agattgcaagcctaatcaaaactttgattccccatcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaaggaaagaagtga 216  Q
    |||||||||||||  |||||||||||||||||| |||||| ||||| ||| ||||     ||||||||   ||  |||| ||||||||||||||||||||    
T  2807055 agattgcaagcctggtcaaaactttgattccccgtcatcatatagcatctaagatccgagacattaaggtgtcggttcgcggaatcaaggaaagaagtga 2807154  T
Q  217 gaggtataactttcaaatttcacagacaccaggatcatcaagcagcagcaacagcagtagagagacggacaatagaagatg 297  Q
    |||||||||||| |||||||||||   || ||||||||||   ||| ||||||||| ||||||||| || ||| |||||||    
T  2807155 gaggtataacttacaaatttcacatgaacaaggatcatca---agccgcaacagcactagagagacagaaaatggaagatg 2807232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 2748681 - 2748906
Alignment:
Q  6 agcagcagagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatc 105  Q
    |||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||      ||||||| || ||||| |   |||    
T  2748681 agcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcatagggc------caatcctcctagatgcgg---atc 2748771  T
Q  106 tctattctgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaag 205  Q
    | || || ||||||||||||| | |||||||||||||||||||| |||||| ||||| ||||| ||| || |||||||   |||||||||||||||||||    
T  2748772 tttagtcggcaagattgcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaag 2748871  T
Q  206 gaaagaagtgagaggtataactttcaaatttcaca 240  Q
    |||||||||||||||||||||||||||||||||||    
T  2748872 gaaagaagtgagaggtataactttcaaatttcaca 2748906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 6 - 280
Target Start/End: Original strand, 2768752 - 2769017
Alignment:
Q  6 agcagcagagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatc 105  Q
    |||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| | |  ||||||||      ||||| | |  || || |   |||    
T  2768752 agcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacccatagggc------caatcgtcccagacgcgg---atc 2768842  T
Q  106 tctattctgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaag 205  Q
    | || ||| ||||||||||||||||||||||||||||| ||||| |||| | || || |  |||||| || ||||||||   ||||||||||||||||||    
T  2768843 tttaatcttcaagattgcaagcctaatcaaaactttgactccccgtcataaaattgcattagagattcaggacattaagttgtcaattcgtggaatcaag 2768942  T
Q  206 gaaagaagtgagaggtataactttcaaatttcacagacaccaggatcatcaagcagcagcaacagcagtagagag 280  Q
    |||||||| |||||||||| |||||||| ||||||   || |||||| |||| |||||| ||||| ||| |||||    
T  2768943 gaaagaagcgagaggtatagctttcaaacttcacatgaacaaggatcctcaaacagcaggaacagtagtggagag 2769017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 2856265 - 2856040
Alignment:
Q  6 agcagcagagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatc 105  Q
    |||||| |||||||||||||||||||||||||||| |||| ||||||||||||||| | || ||||||||      |||||||  |||| |  |   |||    
T  2856265 agcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgatacatagggc------caatcctcatggacgtgg---atc 2856175  T
Q  106 tctattctgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaag 205  Q
    | || ||  |||| || |||||| ||||||||||||||||||||||||| | || || || |||||| || |||| |||   ||||||||||||||||||    
T  2856174 tttagtcaacaaggttacaagccgaatcaaaactttgattccccatcataaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaag 2856075  T
Q  206 gaaagaagtgagaggtataactttcaaatttcaca 240  Q
    ||||||||  |||||||||||||||||||||||||    
T  2856074 gaaagaagccagaggtataactttcaaatttcaca 2856040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 274
Target Start/End: Complemental strand, 2839055 - 2838799
Alignment:
Q  6 agcagcagagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatc 105  Q
    |||||| |||||||||||||||||||||||||||| |||| |||||||||||||| || ||||||||||      |||||||| ||||||||||   |||    
T  2839055 agcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcgactaatgcataggg------ccaatcctcctggatgcag---atc 2838965  T
Q  106 tctattctgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaag 205  Q
    |   || |||| || | ||||  ||||||||||||||||||||| |||  | || || || |||||| |  |||| |||    ||| ||  |||||||||    
T  2838964 t---ttatgcatgactccaaggttaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaactcacggaatcaag 2838868  T
Q  206 gaaagaagtgagaggtataactttcaaatttcacagacaccaggatcatcaagcagcagcaacagcagt 274  Q
     ||||||| |||||||||||||||||||||||| |   || |||||| |||||||||||||||||||||    
T  2838867 aaaagaagcgagaggtataactttcaaatttcaaatgaacaaggatcctcaagcagcagcaacagcagt 2838799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 2758904 - 2759151
Alignment:
Q  13 gagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatctctattc 112  Q
    |||||||||||| ||||||||||||||||| || || |||||||||||||| || |||| |||      ||||||| ||||  || |   |||| |||||    
T  2758904 gagagaagcatcgtttcgcattgaagatataattgacgaataccttcggctgatccatacggc------caatcctcctggtagcgg---atctgtattc 2758994  T
Q  113 tgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaaggaaagaa 212  Q
      ||||||| |||||| |||||||||||||||||||| |||  | || || || |||||| |  |||| |||    ||||||  ||||||||||||||||    
T  2758995 aacaagattacaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaattcacggaatcaaggaaagaa 2759094  T
Q  213 gtgagaggtataactttcaaatttcacagacaccaggatcatcaagcagcagcaaca 269  Q
    | | |||||||||||||||||||||| |   || |||||| |||| |||||||||||    
T  2759095 gcgtgaggtataactttcaaatttcaaatgaacaaggatcctcaaacagcagcaaca 2759151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 2818413 - 2818462
Alignment:
Q  188 tcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatttc 237  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  2818413 tcaattcgtggaatcaaggaaagaagcgagaggtataacttccaaatttc 2818462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 2755734 - 2755782
Alignment:
Q  13 gagagaagcatcatttcgcattgaagatatcatcgatgaataccttcgg 61  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||    
T  2755734 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcgg 2755782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 2818247 - 2818293
Alignment:
Q  13 gagagaagcatcatttcgcattgaagatatcatcgatgaataccttc 59  Q
    |||||| ||||||||||||||||||||| |||| |||||||||||||    
T  2818247 gagagatgcatcatttcgcattgaagatgtcattgatgaataccttc 2818293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 6596 - 6364
Alignment:
Q  17 gaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgcagtcaatctctattctgca 116  Q
    |||||||||||||||||||||||| | || ||||||||||||||||| || ||||||||      ||| ||| |||||||| |   |||  || ||||||    
T  6596 gaagcatcatttcgcattgaagatgttattgatgaataccttcggctgatccatagggc------caaccctcctggatgcgg---atcattagtctgca 6506  T
Q  117 agattgcaagcctaatcaaaactttgattccccatcatcagatagcttctgagattaagaacattaagacatcaattcgtggaatcaaggaaagaagtga 216  Q
    |||||| |||||||||||||||||||||| | || ||||||||||| ||||||||| || |||| |||   |||||||||||||||||||| ||||||||    
T  6505 agattgtaagcctaatcaaaactttgatttctcagcatcagatagcatctgagattcaggacataaagctgtcaattcgtggaatcaaggacagaagtga 6406  T
Q  217 gaggtataactttcaaatttcacagacaccaggatcatcaag 258  Q
     ||||||||||||||||||| |||   ||| |||||||||||    
T  6405 aaggtataactttcaaattttacatgaacctggatcatcaag 6364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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