View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3168_high_5 (Length: 274)
Name: NF3168_high_5
Description: NF3168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3168_high_5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 100 - 274
Target Start/End: Original strand, 40327493 - 40327667
Alignment:
| Q |
100 |
aatgataaatattccatgaatcatgtgaagttgtaagtgttataagatgttttcaacacgttccatgttccttgatcgataattagtttaagattttcgg |
199 |
Q |
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| T |
40327493 |
aatgataaatattccatgaatcatgtgaagttgtaagtgttataagttgttttcaacacgtttcatgttccttgatcgataattagtttaagattttcgg |
40327592 |
T |
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| Q |
200 |
tgattttgttttctgaaattgtatagtaccgtctctttataaatatatatgcacaagttttgatatcactgcatc |
274 |
Q |
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| T |
40327593 |
tgattttgttttctgaaattgtatagtaccgtctttttataaatatatatgcacaagttttgatatgactgcatc |
40327667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 40327343 - 40327444
Alignment:
| Q |
1 |
tacatgaattaacaagtctttgattttgcaggtacgaatataaactagtccaaaagatcgtggaaagaatacgaagccaaacttaatcgtgtcaaattca |
100 |
Q |
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| T |
40327343 |
tacatgaattaacaagtctttgattttgcaggtacgaatataaactagtccaaaagatcgtggaaagaatacgaagccaaacttaatcgtgtcaaattca |
40327442 |
T |
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| Q |
101 |
at |
102 |
Q |
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|| |
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| T |
40327443 |
at |
40327444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 40311698 - 40311780
Alignment:
| Q |
16 |
gtctttgattttgcaggtacgaatataaactagtccaaaagatcgtggaaagaatacgaagccaaacttaatcgtgtcaaatt |
98 |
Q |
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| T |
40311698 |
gtctttaattttgcaggtacgaatataaactagtccaaacgatcgtggaaagagtaaagagccaaatttaatggtgtcaaatt |
40311780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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