View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3168_low_10 (Length: 247)
Name: NF3168_low_10
Description: NF3168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3168_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 4818286 - 4818522
Alignment:
| Q |
1 |
agaaaatccgaacatgctaatactgcccctttgagaaagtggggaaaagcatagtcttcctgtatgtggtcatgaattgtggactcacatattagcaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
4818286 |
agaaaatccgaacatgctaatactgcccgtttgagaaagtggggaaaagcatagtcttcctgtatgtggtcatgaattgtggactcacagattagtaaaa |
4818385 |
T |
|
| Q |
101 |
tggtcggattctattttagaaacaaagacgttttggagctttctgcgtgactatgctctaattatcttagatgccaaaatgttccaaagactccaaatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4818386 |
tggtcggattctattttagaaacaaagacgttttggagctttctgcgtgactatgctctaattatcttagatgccaaaatgttccaaagactcc-aatca |
4818484 |
T |
|
| Q |
201 |
tcaagatatcttacaaagatagagactaatttgatgat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4818485 |
tcaagatatcttacaaagatagagactaatttgatgat |
4818522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 4715263 - 4715400
Alignment:
| Q |
54 |
gtcttcctgtatgtggtcatgaattgtggactcacatattagcaaaatggtcggattctattttagaaacaaagacgttttggagctttctgcgtgacta |
153 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715263 |
gtcttcctgtat-tggtcatgaattgtggactcacagattagcaaaatggtcggattctattttagaaacaaagacgttttggagctttctgcgtgacta |
4715361 |
T |
|
| Q |
154 |
tgctctaattatcttagatgccaaaatgttccaaagact |
192 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
4715362 |
tgctttaattatcttagatgccaaaatgttcctaagact |
4715400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 4790010 - 4790092
Alignment:
| Q |
110 |
tctattttagaaacaaagacgttttggagctttctgcgtgactatgctctaattatcttagatgccaaaatgttccaaagact |
192 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4790010 |
tctattttagaaacaaagacgttttcgagctttctgcgtgactatgctttaattatcttagatgccaaaatgttccaaagact |
4790092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 4789979 - 4790012
Alignment:
| Q |
24 |
tgcccctttgagaaagtggggaaaagcatagtct |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
4789979 |
tgcccctttgagaaagtggggaaaagcatagtct |
4790012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 192
Target Start/End: Original strand, 4700970 - 4701035
Alignment:
| Q |
125 |
aagacgttttggagctttctgcgtgactatgctctaattatcttagatgccaaaatgttccaaagact |
192 |
Q |
| |
|
|||||||||||||||||||| |||||||| | ||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
4700970 |
aagacgttttggagctttctctgtgactat--tttaaatatcttagatggcaaaatattccaaagact |
4701035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University