View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3168_low_11 (Length: 237)
Name: NF3168_low_11
Description: NF3168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3168_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40326855 - 40326633
Alignment:
| Q |
1 |
caactaaaaatatttaaaagcatgccacatacatacccatatttgtgatgttctccactcaagttagcaacttcacataaagctgacctccatttattca |
100 |
Q |
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| T |
40326855 |
caactaaaaatatttaaaagcatgccacatacatacccatatttgtgatgttctccactcaagttagcaacttcacataaagctgacctccatttattca |
40326756 |
T |
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| Q |
101 |
ccttttcagagtcatttccaaactcttcttcatgcttagtcatggcttttccataactatttctctgatgtcttacccaagatggttctattttgtaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40326755 |
ccttttcagagtcatttccaaactcttcttcatgcttagtcatggcttttccataactatttctctgatgtcttacccaagatggttctattttgtaaaa |
40326656 |
T |
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| Q |
201 |
gattggcaaaatctgttggttct |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
40326655 |
gattggcaaaatctgttggttct |
40326633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 59 - 223
Target Start/End: Complemental strand, 40283869 - 40283705
Alignment:
| Q |
59 |
tcaagttagcaacttcacataaagctgacctccatttattcaccttttcagagtcatttccaaactcttcttcatgcttagtcatggcttttccataact |
158 |
Q |
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||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||||||||||||| || |||||||| ||||||| || ||| || |
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| T |
40283869 |
tcaagttagcaacttcagataaagctgacctccattcctttaccttctcagagtcatttccaaactcttttttatgcttagccatggctcttttatagct |
40283770 |
T |
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| Q |
159 |
atttctctgatgtcttacccaagatggttctattttgtaaaagattggcaaaatctgttggttct |
223 |
Q |
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||| ||||||| ||||| || |||||||||||||||||||||||||||| || |||||||| |
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| T |
40283769 |
gtttttctgatgccttacatcggacggttctattttgtaaaagattggcaaaaccttttggttct |
40283705 |
T |
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