View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3168_low_2 (Length: 470)

Name: NF3168_low_2
Description: NF3168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3168_low_2
NF3168_low_2
[»] chr7 (12 HSPs)
chr7 (14-195)||(2266774-2266955)
chr7 (275-368)||(19805585-19805678)
chr7 (274-367)||(7298634-7298727)
chr7 (274-367)||(40521188-40521281)
chr7 (274-352)||(19804796-19804874)
chr7 (275-344)||(40521016-40521084)
chr7 (275-343)||(7298833-7298900)
chr7 (274-344)||(16979613-16979682)
chr7 (278-344)||(46567960-46568025)
chr7 (275-344)||(28949001-28949069)
chr7 (405-454)||(19804884-19804933)
chr7 (301-367)||(46568130-46568196)
[»] chr1 (26 HSPs)
chr1 (273-454)||(26552077-26552258)
chr1 (274-455)||(10227711-10227890)
chr1 (284-368)||(19059549-19059633)
chr1 (279-352)||(19059378-19059451)
chr1 (273-366)||(48871410-48871503)
chr1 (275-366)||(23346419-23346510)
chr1 (277-352)||(26551992-26552067)
chr1 (275-341)||(10227910-10227976)
chr1 (274-367)||(50892962-50893055)
chr1 (275-366)||(28217692-28217783)
chr1 (270-367)||(39669230-39669327)
chr1 (275-344)||(7062192-7062260)
chr1 (274-367)||(41833873-41833966)
chr1 (275-344)||(48752589-48752657)
chr1 (273-344)||(42180569-42180639)
chr1 (275-341)||(48871247-48871312)
chr1 (275-341)||(50893161-50893226)
chr1 (275-344)||(28217530-28217598)
chr1 (276-362)||(50904992-50905080)
chr1 (272-344)||(4156889-4156960)
chr1 (306-366)||(7062038-7062098)
chr1 (274-344)||(41834071-41834140)
chr1 (409-454)||(19059461-19059506)
chr1 (284-340)||(23346620-23346675)
chr1 (276-344)||(50905107-50905175)
chr1 (306-367)||(42180744-42180805)
[»] chr4 (15 HSPs)
chr4 (271-455)||(3102626-3102808)
chr4 (275-454)||(40534050-40534227)
chr4 (294-454)||(9231667-9231825)
chr4 (275-352)||(3102540-3102617)
chr4 (276-352)||(13690216-13690292)
chr4 (274-352)||(9231579-9231657)
chr4 (275-352)||(40533963-40534040)
chr4 (275-366)||(18936850-18936941)
chr4 (275-366)||(37177799-37177890)
chr4 (275-344)||(11147014-11147083)
chr4 (275-360)||(18381488-18381573)
chr4 (275-341)||(5121005-5121071)
chr4 (275-355)||(18936676-18936755)
chr4 (417-455)||(13690301-13690339)
chr4 (278-340)||(11147224-11147285)
[»] chr3 (16 HSPs)
chr3 (273-450)||(27072997-27073174)
chr3 (270-368)||(33214438-33214536)
chr3 (275-454)||(36274120-36274302)
chr3 (275-352)||(33214626-33214703)
chr3 (274-367)||(36635410-36635503)
chr3 (277-352)||(10598810-10598885)
chr3 (275-366)||(19580483-19580574)
chr3 (273-352)||(33219070-33219149)
chr3 (275-352)||(36274312-36274389)
chr3 (275-333)||(27072913-27072971)
chr3 (274-366)||(11650999-11651091)
chr3 (275-333)||(10599004-10599062)
chr3 (405-454)||(10598895-10598944)
chr3 (278-343)||(36635241-36635305)
chr3 (405-455)||(33219158-33219208)
chr3 (418-454)||(33214580-33214616)
[»] chr5 (31 HSPs)
chr5 (275-455)||(791592-791772)
chr5 (277-454)||(8323794-8323970)
chr5 (278-455)||(42630797-42630968)
chr5 (275-368)||(26534669-26534762)
chr5 (273-368)||(130419-130514)
chr5 (270-352)||(8323702-8323784)
chr5 (275-352)||(26534506-26534583)
chr5 (274-367)||(33377820-33377913)
chr5 (275-366)||(8489123-8489214)
chr5 (275-352)||(130254-130331)
chr5 (275-367)||(5146675-5146767)
chr5 (274-366)||(6518202-6518294)
chr5 (275-367)||(13823320-13823412)
chr5 (274-366)||(19898927-19899019)
chr5 (271-332)||(791810-791871)
chr5 (275-352)||(42630711-42630788)
chr5 (278-366)||(35454623-35454710)
chr5 (273-366)||(40881790-40881881)
chr5 (271-344)||(35454447-35454519)
chr5 (275-367)||(228717-228809)
chr5 (272-344)||(14388515-14388586)
chr5 (292-366)||(40881992-40882066)
chr5 (275-343)||(14069861-14069928)
chr5 (272-344)||(19897222-19897293)
chr5 (275-338)||(6518404-6518466)
chr5 (275-343)||(5146504-5146571)
chr5 (290-363)||(27319643-27319716)
chr5 (275-359)||(13823150-13823233)
chr5 (418-455)||(130340-130377)
chr5 (418-454)||(26534593-26534629)
chr5 (278-333)||(228990-229044)
[»] chr2 (22 HSPs)
chr2 (270-455)||(16115041-16115222)
chr2 (274-455)||(42028577-42028756)
chr2 (275-451)||(2059572-2059748)
chr2 (275-450)||(13279924-13280099)
chr2 (275-455)||(7317721-7317899)
chr2 (275-455)||(31860165-31860349)
chr2 (273-352)||(42028765-42028844)
chr2 (273-367)||(31470585-31470678)
chr2 (275-348)||(36059278-36059351)
chr2 (275-352)||(2059490-2059567)
chr2 (275-344)||(31860079-31860148)
chr2 (275-366)||(38086140-38086231)
chr2 (275-357)||(15332844-15332926)
chr2 (275-352)||(7317635-7317712)
chr2 (275-352)||(16115231-16115308)
chr2 (273-333)||(13279838-13279898)
chr2 (275-347)||(38085967-38086038)
chr2 (276-341)||(3671822-3671886)
chr2 (275-366)||(3671996-3672087)
chr2 (275-341)||(31470776-31470841)
chr2 (275-332)||(15330449-15330505)
chr2 (275-305)||(36059248-36059278)
[»] chr8 (14 HSPs)
chr8 (275-454)||(37994795-37994972)
chr8 (270-366)||(41539765-41539861)
chr8 (274-367)||(2814416-2814509)
chr8 (274-352)||(37994707-37994785)
chr8 (275-367)||(397177-397269)
chr8 (275-352)||(44036814-44036891)
chr8 (274-355)||(14193509-14193589)
chr8 (291-368)||(25101746-25101823)
chr8 (275-347)||(41539963-41540034)
chr8 (275-352)||(2814243-2814319)
chr8 (275-366)||(14193324-14193414)
chr8 (274-352)||(397006-397083)
chr8 (405-454)||(44036901-44036950)
chr8 (335-368)||(44036985-44037018)
[»] scaffold0214 (2 HSPs)
scaffold0214 (273-455)||(11624-11805)
scaffold0214 (274-352)||(11814-11892)
[»] chr6 (8 HSPs)
chr6 (276-454)||(33022251-33022431)
chr6 (275-352)||(33022164-33022241)
chr6 (275-367)||(21389021-21389113)
chr6 (276-367)||(7789842-7789933)
chr6 (278-344)||(21389217-21389282)
chr6 (286-357)||(7789678-7789748)
chr6 (276-365)||(28472535-28472624)
chr6 (276-365)||(29859723-29859813)
[»] scaffold0135 (2 HSPs)
scaffold0135 (294-454)||(37533-37691)
scaffold0135 (274-352)||(37445-37523)
[»] scaffold0140 (1 HSPs)
scaffold0140 (275-343)||(15847-15915)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 5e-91; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 2266955 - 2266774
Alignment:
Q  14 cacagatcgaaggtgacaaatggagattccatggattagagatgagtggaagaaactctgagtggtttctactcagaaacgctattatcactttcgtgag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2266955 cacagatcgaaggtgacaaatggagattccatggattagagatgagtggaagaaactctgagtggtttctactcagaaacgctattatcactttcgtgag 2266856  T
Q  114 atgtagagacacgcttccagatgtgggttttcttgagggagtcgatggtgagagtcagtcgcgattgtcaccatagttctag 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||    
T  2266855 atgtagagacacgcttccagatgtgggttttcttgagggagtcgatggtgagagtcattcgcgattatcaccatagatctag 2266774  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 275 - 368
Target Start/End: Complemental strand, 19805678 - 19805585
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat 368  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||||    
T  19805678 gagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacacgtcgttgctttcttttaaaataattat 19805585  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 274 - 367
Target Start/End: Original strand, 7298634 - 7298727
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  7298634 tgagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 7298727  T

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Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 274 - 367
Target Start/End: Complemental strand, 40521281 - 40521188
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| || ||||||| ||||||||||||||    
T  40521281 tgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataatta 40521188  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 19804796 - 19804874
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||| ||||||||||    
T  19804796 tgagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaattgaaacacgacacatcgttgtttt 19804874  T

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Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 275 - 344
Target Start/End: Original strand, 40521016 - 40521084
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  40521016 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaatatgacacgtc 40521084  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 7298900 - 7298833
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgt 343  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| || ||||||    
T  7298900 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacataacacgt 7298833  T

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Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 16979682 - 16979613
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    ||||||||||||||||||||||||| ||||| |||||| |||||||| |||||||||||| ||||||||||    
T  16979682 tgagaaattcttgtgtaggaacgaatctaac-tatcattcttacaaataacaaattaaaacatgacacgtc 16979613  T

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Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 46567960 - 46568025
Alignment:
Q  278 aaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||||||    
T  46567960 aaattcttgtgtaggaacgaacttaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 46568025  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 28949069 - 28949001
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    |||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||||||    
T  28949069 gagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgtc 28949001  T

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Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 19804933 - 19804884
Alignment:
Q  405 caccaccactaattcgtgatcttccatcaccattcaccaccaacaccatt 454  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  19804933 caccaccactagttcgtgatcttccatcaccattcaccaccaacatcatt 19804884  T

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Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 301 - 367
Target Start/End: Complemental strand, 46568196 - 46568130
Alignment:
Q  301 taacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    |||| |||||| ||||||||||||||||||||| ||||||| || ||||||| ||| ||||||||||    
T  46568196 taacatatcattcttacaaacaacaaattaaaacatgacacatcattgttttatttaaaaataatta 46568130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 273 - 454
Target Start/End: Complemental strand, 26552258 - 26552077
Alignment:
Q  273 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnnnn 372  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  26552258 ttgagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattataaaa 26552159  T
Q  373 nnntaaatcaattagtccttnnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccatt 454  Q
       |||||||| ||||||||            |||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  26552158 aaataaatcaactagtcctttctctctctctccaccgccactagttcgtgatcttccatcaccattcaccaccaacaccatt 26552077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 274 - 455
Target Start/End: Original strand, 10227711 - 10227890
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnnnnn 373  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||         
T  10227711 tgagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaa 10227810  T
Q  374 nntaaatcaattagtccttnnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccattt 455  Q
      ||||| || ||||||||            ||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  10227811 aataaattaactagtcctt--tctctctctccaccaccactagtttgtgatcttccatcaccattcaccaccaacaccattt 10227890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 284 - 368
Target Start/End: Complemental strand, 19059633 - 19059549
Alignment:
Q  284 ttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat 368  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  19059633 ttgtgtaggaacgaacctaacctatcatccttataaagaacaaattaaaatatgacacatcgttgttttcttttaaaataattat 19059549  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 279 - 352
Target Start/End: Original strand, 19059378 - 19059451
Alignment:
Q  279 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19059378 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 19059451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 273 - 366
Target Start/End: Complemental strand, 48871503 - 48871410
Alignment:
Q  273 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||  |||||| ||||||| |||||||||||||    
T  48871503 ttgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcacgtcattgttttattttaaaataatt 48871410  T

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Target: chr1; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 275 - 366
Target Start/End: Original strand, 23346419 - 23346510
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| |||||||||| || |||| |||||||||||||    
T  23346419 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcatttttttattttaaaataatt 23346510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 277 - 352
Target Start/End: Original strand, 26551992 - 26552067
Alignment:
Q  277 gaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  26551992 gaaattcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtcgttgtttt 26552067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 10227976 - 10227910
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacac 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10227976 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacac 10227910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 367
Target Start/End: Original strand, 50892962 - 50893055
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    ||||||||| |||||||| ||||||| |||| |||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  50892962 tgagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 50893055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 28217783 - 28217692
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    |||||||| ||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||| || ||||||| |||||||||||||    
T  28217783 gagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacacatcattgttttattttaaaataatt 28217692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 367
Target Start/End: Complemental strand, 39669327 - 39669230
Alignment:
Q  270 tttttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    ||||| |||||||||||||||| ||||||| |||| |||||| |||||||| |||||||||||| |||||||||  ||||||| ||||||||||||||    
T  39669327 tttttaagaaattcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgacacgttattgttttattttaaaataatta 39669230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 7062260 - 7062192
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    |||||||| ||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||    
T  7062260 gagaaatttttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaatatgacacgtc 7062192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 367
Target Start/End: Original strand, 41833873 - 41833966
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    |||||||||||||| ||| |||||| ||||  |||||| |||||| |||||||||||||| |||||||||| || |||| ||||||||||||||    
T  41833873 tgagaaattcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgacacgtcattattttattttaaaataatta 41833966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 48752657 - 48752589
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  48752657 gagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 48752589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 344
Target Start/End: Original strand, 42180569 - 42180639
Alignment:
Q  273 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    ||||||||||||||||||||||||||||||| ||| |||  |||||||||||||||||||| ||||||||||    
T  42180569 ttgagaaattcttgtgtaggaacgaacctaa-ctagcattattacaaacaacaaattaaaacatgacacgtc 42180639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 48871247 - 48871312
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacac 341  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| |||||||    
T  48871247 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaataacaaattaaaacatgacac 48871312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 50893226 - 50893161
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacac 341  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||| |||||||    
T  50893226 gagaaattcttgtgtaggaacgaacctaa-ctatcattattacaaacaacaaattaaaacatgacac 50893161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 275 - 344
Target Start/End: Original strand, 28217530 - 28217598
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    ||||||||| |||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  28217530 gagaaattcctgtgtaggaacgaacctaat-tatcattcttacaaacaacaaattaaaacatgacacgtc 28217598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 50904992 - 50905080
Alignment:
Q  276 agaaattcttgtgtaggaacgaacctaacctat--catccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaat 362  Q
    ||||||||||||||||||||||||||||  |||  |||  ||||||||||||| |||||| |||||||||| ||||||| |||||||||    
T  50904992 agaaattcttgtgtaggaacgaacctaatatatatcatttttacaaacaacaagttaaaacatgacacgtcattgttttattttaaaat 50905080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 344
Target Start/End: Original strand, 4156889 - 4156960
Alignment:
Q  272 tttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||||||| || ||||||||| ||||||||||    
T  4156889 tttgagaaattcttgtgtaggaaggaacctaa-ctatcattcttacaaataataaattaaaacatgacacgtc 4156960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 366
Target Start/End: Original strand, 7062038 - 7062098
Alignment:
Q  306 tatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    |||||| ||||||||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  7062038 tatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatt 7062098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 41834140 - 41834071
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    |||||||||||||||||||||||||| |||| || |||  |||||||||||||||||||| ||||||||||    
T  41834140 tgagaaattcttgtgtaggaacgaacataac-tagcattattacaaacaacaaattaaaacatgacacgtc 41834071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 454
Target Start/End: Complemental strand, 19059506 - 19059461
Alignment:
Q  409 accactaattcgtgatcttccatcaccattcaccaccaacaccatt 454  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||    
T  19059506 accactagttcgtgatcttccatcaccattcaccaccaccaccatt 19059461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 23346675 - 23346620
Alignment:
Q  284 ttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgaca 340  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||    
T  23346675 ttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgaca 23346620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 50905175 - 50905107
Alignment:
Q  276 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    ||||||| |||||||  |||||| ||||| |||||| ||||||||||||||||||||| |||| |||||    
T  50905175 agaaatttttgtgtaaaaacgaatctaacatatcattcttacaaacaacaaattaaaacatgatacgtc 50905107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 367
Target Start/End: Complemental strand, 42180805 - 42180744
Alignment:
Q  306 tatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    |||||| ||||||||||||||| ||||| ||||||| || || |||| ||||||||||||||    
T  42180805 tatcattcttacaaacaacaaactaaaacatgacacatcattattttattttaaaataatta 42180744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 271 - 455
Target Start/End: Complemental strand, 3102808 - 3102626
Alignment:
Q  271 ttttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnn 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||      
T  3102808 ttttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttttttaaaataattataa 3102709  T
Q  371 nnnnntaaatcaattagtccttnnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccattt 455  Q
         |||||||| ||||||||            ||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  3102708 aaaattaaatcaactagtcctt--tctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccattt 3102626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 275 - 454
Target Start/End: Complemental strand, 40534227 - 40534050
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnnnnnn 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||          
T  40534227 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 40534128  T
Q  375 ntaaatcaattagtccttnnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccatt 454  Q
     |||||||| ||||||||            ||||||||||| || |||||||||||||||||||||||||||||||||||    
T  40534127 ttaaatcaactagtcctt--tctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatt 40534050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 294 - 454
Target Start/End: Complemental strand, 9231825 - 9231667
Alignment:
Q  294 acgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnnnnnnntaaatcaattagtccttn 393  Q
    |||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||       |||||||| ||||||||     
T  9231825 acgaacctaacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataattataaaaaaataaatcaactagtcctt- 9231727  T
Q  394 nnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccatt 454  Q
               |||||||| || || |||||||||||||||||||||||||||||||||||    
T  9231726 -tctctctctccaccaccattagtttgtgatcttccatcaccattcaccaccaacaccatt 9231667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 3102540 - 3102617
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  3102540 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 3102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 13690216 - 13690292
Alignment:
Q  276 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  13690216 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 13690292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 9231579 - 9231657
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  9231579 tgagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 9231657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 40533963 - 40534040
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||    
T  40533963 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcgttgtttt 40534040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 18936941 - 18936850
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    ||||||||||||| |||||||||||||||  |||||| ||||||||||| ||||||||| |||||||||| ||||||| |||||||||||||    
T  18936941 gagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatt 18936850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 37177890 - 37177799
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    ||||||||||||| ||||||||||| |||| |||||| ||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||    
T  37177890 gagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataatt 37177799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 275 - 344
Target Start/End: Original strand, 11147014 - 11147083
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  11147014 gagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtc 11147083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 275 - 360
Target Start/End: Complemental strand, 18381573 - 18381488
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaa 360  Q
    |||||||||||||||||||||||||||||| | |||| ||||||| ||||||||||||| ||||||| || ||||||| |||||||    
T  18381573 gagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacacatcattgttttattttaaa 18381488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 5121071 - 5121005
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacac 341  Q
    ||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||| |||||||    
T  5121071 gagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgacac 5121005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 355
Target Start/End: Original strand, 18936676 - 18936755
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttctt 355  Q
    |||||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||| |||| ||||| || |||||||    
T  18936676 gagaaattcttgtgtatgaacgaacataac-tatcattcttacaaacaacaaattaaaacatgatacgtcatttttttctt 18936755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 417 - 455
Target Start/End: Complemental strand, 13690339 - 13690301
Alignment:
Q  417 ttcgtgatcttccatcaccattcaccaccaacaccattt 455  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13690339 ttcgtgatcttccatcaccattcaccaccaacaccattt 13690301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 11147285 - 11147224
Alignment:
Q  278 aaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgaca 340  Q
    |||||||| ||||| |||||| ||||| ||| || ||||||||||| ||||||||||||||||    
T  11147285 aaattcttatgtagaaacgaatctaac-tattattcttacaaacaataaattaaaatatgaca 11147224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 273 - 450
Target Start/End: Complemental strand, 27073174 - 27072997
Alignment:
Q  273 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnnnn 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||        
T  27073174 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaa 27073075  T
Q  373 nnntaaatcaattagtccttnnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacac 450  Q
       ||||||||  |||||||            ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  27073074 aaataaatcaacaagtcctttctctctccctccaccaccactagttcgtgatcttccatcaccattcaccagcaacac 27072997  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 270 - 368
Target Start/End: Original strand, 33214438 - 33214536
Alignment:
Q  270 tttttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat 368  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33214438 ttttagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 33214536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 275 - 454
Target Start/End: Original strand, 36274120 - 36274302
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnnnnnn 374  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||          
T  36274120 gagaaatt-ttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 36274218  T
Q  375 ntaaatcaattagtcctt----nnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccatt 454  Q
     |||||||| |||| |||                ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36274219 ataaatcaactagttctttctctctctctctctccaccaccactagttcgtgatcttccatcaccattcaccaccaacaccatt 36274302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 275 - 352
Target Start/End: Complemental strand, 33214703 - 33214626
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  33214703 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33214626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 274 - 367
Target Start/End: Complemental strand, 36635503 - 36635410
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  36635503 tgagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 36635410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 277 - 352
Target Start/End: Original strand, 10598810 - 10598885
Alignment:
Q  277 gaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  10598810 gaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttt 10598885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 19580574 - 19580483
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||| ||| ||||||| |||||||||||||    
T  19580574 gagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatt 19580483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 273 - 352
Target Start/End: Original strand, 33219070 - 33219149
Alignment:
Q  273 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||    
T  33219070 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgattcgtcattgtttt 33219149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 275 - 352
Target Start/End: Complemental strand, 36274389 - 36274312
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    ||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  36274389 gagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttt 36274312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 333
Target Start/End: Original strand, 27072913 - 27072971
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaa 333  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27072913 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaa 27072971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 274 - 366
Target Start/End: Original strand, 11650999 - 11651091
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    |||||||||||||| || ||||||||||||| |||||| |||||||||||||| ||||||||||| |  || ||||||| |||||||||||||    
T  11650999 tgagaaattcttgtttatgaacgaacctaacatatcattcttacaaacaacaatttaaaatatgatatatcattgttttattttaaaataatt 11651091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 333
Target Start/End: Complemental strand, 10599062 - 10599004
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaa 333  Q
    ||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||    
T  10599062 gagaaattcttgtgtggaaacgaacctaacatatcatccttacaaacaacaaattaaaa 10599004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 10598944 - 10598895
Alignment:
Q  405 caccaccactaattcgtgatcttccatcaccattcaccaccaacaccatt 454  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10598944 caccaccactagttcgtgatcttccatcaccattcaccaccaacaccatt 10598895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 36635241 - 36635305
Alignment:
Q  278 aaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgt 343  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||||||||||| |||||||||    
T  36635241 aaattcttgtgtaggaacgaacctaa-ctatcattgttacaaacaacaaattaaaacatgacacgt 36635305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 455
Target Start/End: Complemental strand, 33219208 - 33219158
Alignment:
Q  405 caccaccactaattcgtgatcttccatcaccattcaccaccaacaccattt 455  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  33219208 caccaccactagttggtgatcttccatcaccattcaccaccaacaccattt 33219158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 454
Target Start/End: Original strand, 33214580 - 33214616
Alignment:
Q  418 tcgtgatcttccatcaccattcaccaccaacaccatt 454  Q
    |||| ||||||||||||||||||||||||||||||||    
T  33214580 tcgtcatcttccatcaccattcaccaccaacaccatt 33214616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 275 - 455
Target Start/End: Original strand, 791592 - 791772
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnnnnnn 374  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||          
T  791592 gagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 791691  T
Q  375 ntaaatcaattagtccttnnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccattt 455  Q
     ||||| || ||||||||            ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  791692 ataaattaactagtcctttctctctctctccaccaccactagttcgtgatcttccatcaccattcaccaccaacaccattt 791772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 277 - 454
Target Start/End: Complemental strand, 8323970 - 8323794
Alignment:
Q  277 gaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat-nnnnnnn 375  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||            
T  8323970 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaaaa 8323871  T
Q  376 taaatcaattagtccttnnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccatt 454  Q
    |||||||| ||||||||            |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8323870 taaatcaactagtcctt--tctctctctccaccaccactaactcgtgatcttccatcaccattcaccaccaacaccatt 8323794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 278 - 455
Target Start/End: Complemental strand, 42630968 - 42630797
Alignment:
Q  278 aaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnnnnnnnta 377  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       |     
T  42630968 aaattcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtcgttgttttcttttaaaataattataaaaaaatg 42630869  T
Q  378 aatcaattagtccttnnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccattt 455  Q
    |||||| |||||||             || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42630868 aatcaactagtcct------ctctctccagcaccactaattcgtgatcttccatcaccattcaccaccaacaccattt 42630797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 275 - 368
Target Start/End: Complemental strand, 26534762 - 26534669
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26534762 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 26534669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 273 - 368
Target Start/End: Complemental strand, 130514 - 130419
Alignment:
Q  273 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat 368  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  130514 ttgagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtcgttgttttcttttaaaataattat 130419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 8323702 - 8323784
Alignment:
Q  270 tttttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||    
T  8323702 tttttgagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcgttgtttt 8323784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 26534506 - 26534583
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  26534506 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 26534583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 274 - 367
Target Start/End: Complemental strand, 33377913 - 33377820
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    |||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  33377913 tgagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 33377820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 275 - 366
Target Start/End: Original strand, 8489123 - 8489214
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    ||||||||||||||||||||| || ||||| |||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  8489123 gagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtcattgttttattttaaaataatt 8489214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 130254 - 130331
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||    
T  130254 gagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttt 130331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 275 - 367
Target Start/End: Complemental strand, 5146767 - 5146675
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    ||||||||||||||||| |||||||||||  |||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  5146767 gagaaattcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 5146675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 274 - 366
Target Start/End: Original strand, 6518202 - 6518294
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||  || ||| ||||||| |||||||||||||    
T  6518202 tgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcatgtcattgttttattttaaaataatt 6518294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 275 - 367
Target Start/End: Complemental strand, 13823412 - 13823320
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    ||||||||||||||||||||||||| |||| ||||||  ||||||| |||||||||||| |||||||||| ||||||| ||||||||||||||    
T  13823412 gagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtcattgttttattttaaaataatta 13823320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 274 - 366
Target Start/End: Complemental strand, 19899019 - 19898927
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    ||||||||||||||||||||||||||||||| ||||||  ||| |||||||||||||||| |||||| ||| ||||||| |||||||||||||    
T  19899019 tgagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgtcattgttttattttaaaataatt 19898927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 791871 - 791810
Alignment:
Q  271 ttttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaa 332  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  791871 ttttgagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaa 791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 42630711 - 42630788
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| || |||||||    
T  42630711 gagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacacttcattgtttt 42630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 366
Target Start/End: Complemental strand, 35454710 - 35454623
Alignment:
Q  278 aaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |||||||  || |||||||||    
T  35454710 aaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattgttttagttaaaaataatt 35454623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 366
Target Start/End: Original strand, 40881790 - 40881881
Alignment:
Q  273 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    |||||||||| |||||||||||||||||||||  || || ||||||||||| ||||||||| |||||||||| ||||||| |||||||||||||    
T  40881790 ttgagaaattgttgtgtaggaacgaacctaac--attattcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatt 40881881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 35454447 - 35454519
Alignment:
Q  271 ttttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    |||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  35454447 ttttgagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 35454519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 275 - 367
Target Start/End: Original strand, 228717 - 228809
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    ||||||||  |||||||||||||||||||| |||||| |||| |||||| ||||||||| |||||||||  ||||||| ||||||||||||||    
T  228717 gagaaattactgtgtaggaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgttattgttttattttaaaataatta 228809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 14388586 - 14388515
Alignment:
Q  272 tttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    |||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  14388586 tttgagaaattcttgtgtaggaacaaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 14388515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 292 - 366
Target Start/End: Complemental strand, 40882066 - 40881992
Alignment:
Q  292 gaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    ||||||| ||||| |||||| |||||||||||||||||||||||||||||||  ||||||| |||||||||||||    
T  40882066 gaacgaatctaacatatcattcttacaaacaacaaattaaaatatgacacgttattgttttattttaaaataatt 40881992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 14069861 - 14069928
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgt 343  Q
    ||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||| |||||||||    
T  14069861 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttataaacaacaaattaaaacatgacacgt 14069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 272 - 344
Target Start/End: Original strand, 19897222 - 19897293
Alignment:
Q  272 tttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    ||||| ||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  19897222 tttgaaaaattattgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 19897293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 275 - 338
Target Start/End: Complemental strand, 6518466 - 6518404
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatga 338  Q
    ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||    
T  6518466 gagaaattcttgtgtagtaacgaacctaac-tatcattcttacaaacaacaaattaaaatatga 6518404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 5146504 - 5146571
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgt 343  Q
    |||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||| |||||||||    
T  5146504 gagaaattattgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgt 5146571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 27319716 - 27319643
Alignment:
Q  290 aggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaata 363  Q
    |||||| || ||||| |||||| |||||||||||||||||||||||||| || || ||||||| ||||||||||    
T  27319716 aggaaccaatctaacatatcattcttacaaacaacaaattaaaatatgaaacatcattgttttattttaaaata 27319643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 275 - 359
Target Start/End: Original strand, 13823150 - 13823233
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaa 359  Q
    ||||||||||||||||||||||||||||| ||||||| | || |||||| ||| ||||| |||||||||  || |||||||||||    
T  13823150 gagaaattcttgtgtaggaacgaacctaa-ctatcattcgtataaacaataaactaaaacatgacacgtattttttttcttttaa 13823233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 455
Target Start/End: Complemental strand, 130377 - 130340
Alignment:
Q  418 tcgtgatcttccatcaccattcaccaccaacaccattt 455  Q
    ||||||||||||||||||||||||||||||||||||||    
T  130377 tcgtgatcttccatcaccattcaccaccaacaccattt 130340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 26534629 - 26534593
Alignment:
Q  418 tcgtgatcttccatcaccattcaccaccaacaccatt 454  Q
    |||| ||||||||||||||||||||||||||||||||    
T  26534629 tcgtcatcttccatcaccattcaccaccaacaccatt 26534593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 333
Target Start/End: Complemental strand, 229044 - 228990
Alignment:
Q  278 aaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaa 333  Q
    ||||| |||||||| ||||||| |||| |||||| |||||||||||||||||||||    
T  229044 aaatttttgtgtagaaacgaacataac-tatcattcttacaaacaacaaattaaaa 228990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 270 - 455
Target Start/End: Original strand, 16115041 - 16115222
Alignment:
Q  270 tttttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatn 369  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16115041 tttttgagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattata 16115140  T
Q  370 nnnnnntaaatcaattagtccttnnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccattt 455  Q
          ||||||||     ||||            |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16115141 aaaaaataaatcaa----ccctttttctctctctccaccaccactaattcgtgatcttccatcaccattcaccaccaacaccattt 16115222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 274 - 455
Target Start/End: Original strand, 42028577 - 42028756
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnnnnn 373  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||         
T  42028577 tgagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaa 42028676  T
Q  374 nntaaatcaattagtccttnnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccattt 455  Q
      |||||||| ||||||||            ||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  42028677 attaaatcaactagtcctt--tctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccattt 42028756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 275 - 451
Target Start/End: Complemental strand, 2059748 - 2059572
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnnnnnn 374  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  2059748 gagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattataaaaaa 2059649  T
Q  375 ntaaatcaattagtccttnnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacacc 451  Q
     |||||||| ||||| ||            |||||||||||||||||||||||| |||| |||||||||||||||||    
T  2059648 ataaatcaactagtcatttctctctctctccaccaccactaattcgtgatcttctatcatcattcaccaccaacacc 2059572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 275 - 450
Target Start/End: Complemental strand, 13280099 - 13279924
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnnnnnn 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||          
T  13280099 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgttttcttttaaaataattataaaaaa 13280000  T
Q  375 ntaaatcaattagtccttnnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacac 450  Q
     ||||||||  |||||||            ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  13279999 ataaatcaacaagtcctttctctctccctccaccaccactagttcgtgatcttccatcaccattcaccagcaacac 13279924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 275 - 455
Target Start/End: Complemental strand, 7317899 - 7317721
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnnnnnn 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||| ||||||||||||||||||||          
T  7317899 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacattgtttttttcttttaaaataattataaaaaa 7317800  T
Q  375 ntaaatcaattagtccttnnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccattt 455  Q
     |||||||| ||||| ||            |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7317799 ataaatcaactagtcatt--tctctctctccaccaccactaattcgtgatcttccatcaccattcaccaccaacaccattt 7317721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 275 - 455
Target Start/End: Complemental strand, 31860349 - 31860165
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnnnnnn 374  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||          
T  31860349 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacatcgttgttttcttttaaaataattataaaaaa 31860250  T
Q  375 ntaaatcaattagtcctt----nnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccattt 455  Q
     ||||| || ||||||||                ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31860249 ataaattaactagtcctttctctctctctctctccaccaccactagttcgtgatcttccatcaccattcaccaccaacaccattt 31860165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 273 - 352
Target Start/End: Complemental strand, 42028844 - 42028765
Alignment:
Q  273 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  42028844 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 42028765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 273 - 367
Target Start/End: Original strand, 31470585 - 31470678
Alignment:
Q  273 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  31470585 ttgagaaattcttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 31470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 36059351 - 36059278
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttg 348  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  36059351 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttg 36059278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 2059490 - 2059567
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||    
T  2059490 gagaaattcttgggtaggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacacttcattgtttt 2059567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 275 - 344
Target Start/End: Original strand, 31860079 - 31860148
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  31860079 gagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtc 31860148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 38086231 - 38086140
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    |||||||| ||||||||| || |||||||| |||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||||||||    
T  38086231 gagaaatttttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatgatacgtcattgttttattttaaaataatt 38086140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 275 - 357
Target Start/End: Complemental strand, 15332926 - 15332844
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttctttt 357  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| |||||||||| ||||||| ||||    
T  15332926 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattgttttatttt 15332844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 7317635 - 7317712
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    |||||| | |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  7317635 gagaaacttttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcgttgtttt 7317712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 275 - 352
Target Start/End: Complemental strand, 16115308 - 16115231
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||    
T  16115308 gagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacacttcattgtttt 16115231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 13279838 - 13279898
Alignment:
Q  273 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaa 333  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13279838 ttgagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaa 13279898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 38085967 - 38086038
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgtt 347  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  38085967 gagaaattcttgtgtaggaacgaaactaac-tatcattcttacaaacaacaaattaaaacatgacacgtcgtt 38086038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 341
Target Start/End: Original strand, 3671822 - 3671886
Alignment:
Q  276 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacac 341  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||    
T  3671822 agaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaaacatgacac 3671886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 3672087 - 3671996
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    ||||||||||| || ||||||||| ||||  ||||||  ||||||| ||||||||||||||| ||||||| ||||||| |||||||||||||    
T  3672087 gagaaattcttatggaggaacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtcattgttttattttaaaataatt 3671996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 31470841 - 31470776
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacac 341  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||    
T  31470841 gagaaatttttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaattaaataatgacac 31470776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 15330449 - 15330505
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaa 332  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  15330449 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaataaattaaa 15330505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 305
Target Start/End: Original strand, 36059248 - 36059278
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacc 305  Q
    |||||||||||||||||||||||||||||||    
T  36059248 gagaaattcttgtgtaggaacgaacctaacc 36059278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 275 - 454
Target Start/End: Complemental strand, 37994972 - 37994795
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnnnnnn 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||          
T  37994972 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 37994873  T
Q  375 ntaaatcaattagtccttnnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccatt 454  Q
     |||||||| ||||||||            ||||||||||| || |||||||||||||||||||||||||||||||||||    
T  37994872 ttaaatcaactagtcctt--tctctctctccaccaccactagttggtgatcttccatcaccattcaccaccaacaccatt 37994795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 270 - 366
Target Start/End: Original strand, 41539765 - 41539861
Alignment:
Q  270 tttttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    |||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41539765 ttttagagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtcgttgttttattttaaaataatt 41539861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 274 - 367
Target Start/End: Complemental strand, 2814509 - 2814416
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||    
T  2814509 tgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttttttaaaaataatta 2814416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 37994707 - 37994785
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  37994707 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcgttgtttt 37994785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 275 - 367
Target Start/End: Complemental strand, 397269 - 397177
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    ||||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  397269 gagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 397177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 44036814 - 44036891
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  44036814 gagaaattcatgtgtagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcgttgtttt 44036891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 14193589 - 14193509
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttctt 355  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| || |||||||    
T  14193589 tgagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatttttttctt 14193509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 25101746 - 25101823
Alignment:
Q  291 ggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat 368  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||||||||||| | ||||||||||||||||||||||||    
T  25101746 ggaacgaacctaacctatcattcttgcaaacaacaaaataaaatatgacacattgttgttttcttttaaaataattat 25101823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 41540034 - 41539963
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgtt 347  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  41540034 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcgtt 41539963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 2814243 - 2814319
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||  ||||||||||||| ||||    
T  2814243 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaatcatgacacgtcgttttttt 2814319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 275 - 366
Target Start/End: Original strand, 14193324 - 14193414
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatt 366  Q
    |||||||| |||| |||||||||||||||| ||| ||  |||||||||||||||||||| ||||||| || ||||||| |||||||||||||    
T  14193324 gagaaatttttgt-taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataatt 14193414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 397006 - 397083
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    ||||||||||||||| |||||||||||||| ||||||| ||||||||||| ||||||||| || |||||| ||| ||||    
T  397006 tgagaaattcttgtgcaggaacgaacctaa-ctatcattcttacaaacaataaattaaaacataacacgttgttttttt 397083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 44036950 - 44036901
Alignment:
Q  405 caccaccactaattcgtgatcttccatcaccattcaccaccaacaccatt 454  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  44036950 caccaccactagttcgtgatcttccatcaccactcaccaccaacaccatt 44036901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 368
Target Start/End: Complemental strand, 44037018 - 44036985
Alignment:
Q  335 atgacacgtcgttgttttcttttaaaataattat 368  Q
    ||||||||||||||||||||||||||||||||||    
T  44037018 atgacacgtcgttgttttcttttaaaataattat 44036985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 273 - 455
Target Start/End: Original strand, 11624 - 11805
Alignment:
Q  273 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat-nnn 371  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||        
T  11624 ttgagtaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacatcattgttttcttttaaaataattataaaa 11723  T
Q  372 nnnntaaatcaattagtccttnnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccattt 455  Q
        |||||||| ||||||||            ||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  11724 aaactaaatcaactagtcctt--tctctctctccaccaccactagtttgtgatcttccatcaccattcaccaccaacaccattt 11805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 274 - 352
Target Start/End: Complemental strand, 11892 - 11814
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11892 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 11814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 276 - 454
Target Start/End: Complemental strand, 33022431 - 33022251
Alignment:
Q  276 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnnnnnnn 375  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||           
T  33022431 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaaa 33022332  T
Q  376 taaatcaattagtcctt--nnnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccatt 454  Q
    |||||||| ||||| ||              ||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  33022331 taaatcaactagtcatttctctctctctctccaccaccactagttcatgatcttccatcaccattcaccaccaacaccatt 33022251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 33022164 - 33022241
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33022164 gagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33022241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 275 - 367
Target Start/End: Original strand, 21389021 - 21389113
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    ||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||||    
T  21389021 gagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataatta 21389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 276 - 367
Target Start/End: Complemental strand, 7789933 - 7789842
Alignment:
Q  276 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataatta 367  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||| |||||||||| ||||||| ||  ||||||||||    
T  7789933 agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttttttaaaaaataatta 7789842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 21389282 - 21389217
Alignment:
Q  278 aaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtc 344  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  21389282 aaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 21389217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 7789678 - 7789748
Alignment:
Q  286 gtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttctttt 357  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| ||| ||||||| ||||    
T  7789678 gtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacatgtcattgttttttttt 7789748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 365
Target Start/End: Complemental strand, 28472624 - 28472535
Alignment:
Q  276 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataat 365  Q
    ||||||| || |||||||||||||||||  ||||||  ||| |||||||||||||||  || ||||||  || |||||||||||||||||    
T  28472624 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgttatttttttcttttaaaataat 28472535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 365
Target Start/End: Complemental strand, 29859813 - 29859723
Alignment:
Q  276 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacg-tcgttgttttcttttaaaataat 365  Q
    ||||||| || |||||||||||||||||  ||||||  ||| |||||||||||||||  || ||||| |  || |||||||||||||||||    
T  29859813 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgttattttttttcttttaaaataat 29859723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 294 - 454
Target Start/End: Complemental strand, 37691 - 37533
Alignment:
Q  294 acgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattatnnnnnnntaaatcaattagtccttn 393  Q
    |||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||       |||||||| ||||||||     
T  37691 acgaacctaacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataattataaaaaaataaatcaactagtcctt- 37593  T
Q  394 nnnnnnnnnnncaccaccactaattcgtgatcttccatcaccattcaccaccaacaccatt 454  Q
               |||||||| || || |||||||||||||||||||||||||||||||||||    
T  37592 -tctctctctccaccaccattagtttgtgatcttccatcaccattcaccaccaacaccatt 37533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 37445 - 37523
Alignment:
Q  274 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 352  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  37445 tgagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 37523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 15847 - 15915
Alignment:
Q  275 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgt 343  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  15847 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgt 15915  T

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