View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3168_low_6 (Length: 287)
Name: NF3168_low_6
Description: NF3168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3168_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 38853586 - 38853321
Alignment:
| Q |
17 |
cacagacctttcaaaacaattaaacgcataaacgtaagtgaaaaagtcattacgttaaaacgcataaaccctcaagaaccctaaaatgccataactcaat |
116 |
Q |
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| T |
38853586 |
cacagccctttcaaaacaattaaacgcataaacgtaagtgaaaaagtcattatgttaaa-cgcataaaccctcaagaaccctaaaatgccagaactcaat |
38853488 |
T |
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| Q |
117 |
tcttgcgattctgaaacaaaaatcgtgtttctgatgcttgcccaacctcaagagagtgattgaaaacgtgaatcttcatcatcgatttgtttttcctcaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38853487 |
tcttgcgattctgaaacaaaaatcgtgtttctgatgcttgcccaacctcaagagagtgattgaaaacgtaaatcttcatcatcgatttgtttttcctcaa |
38853388 |
T |
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| Q |
217 |
gttgttctccatcaacatctttcatttttctgcgaatcatcataagttttccgtgatgaattcatct |
283 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38853387 |
gttgttctccataaacatctttcatttttctgcgaatcatcataaattttccgtgatgaattcatct |
38853321 |
T |
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