View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3168_low_8 (Length: 261)
Name: NF3168_low_8
Description: NF3168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3168_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 11544927 - 11544682
Alignment:
| Q |
1 |
gagtatattttttcgtaatcttgattaattcagagacta----gataacgtttgacatattcaaggaccaaagctacagtatactctcaattataaagca |
96 |
Q |
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| T |
11544927 |
gagtatattttttcgtaatcttgattaattcagagactatatagataacgtttgacatattcaaggaccaaagctacagtttactctcaattataaagca |
11544828 |
T |
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| Q |
97 |
taagatgttacctgtgatcgctttgtaggatctttgaggaattcaaaaactttttgagcaggcagagggagccaaagggtggtagcagcagtaacaatag |
196 |
Q |
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| T |
11544827 |
aaagatgttacctgtgatcgctttgtaggatctttgaggaattcaaaaactttcagagcaggcagagggagccaaagggtggtagccgcagtaacaatag |
11544728 |
T |
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| Q |
197 |
tgccatttggctggcttgtatcatcgtccatggtgctgcgaaaaga |
242 |
Q |
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| T |
11544727 |
tgccatttggctggcttgtatcatcgtccgtggtgctgcgaaaaga |
11544682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 11558302 - 11558116
Alignment:
| Q |
38 |
tagataacgtttgacatattcaaggaccaaagctacagtatactctcaattataaagcataagatgttacctgtgatcgctttgtaggatctttgaggaa |
137 |
Q |
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| T |
11558302 |
tagataacgtttgacatatccaaggaccaaaaccacaatttactctcaattataaaacaaagcatgttacctgtgatcgttttgtaggatctttgaggaa |
11558203 |
T |
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| Q |
138 |
ttcaaaaactttttgagcaggcagagggagccaaagggtggtagcagcagtaacaatagtgccatttggctggcttgtatcatcgtc |
224 |
Q |
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| T |
11558202 |
ttcaaaaactttctgagcaggcagagggagccaaagggtggtagcagcagtaacaacagtgccatttggctggcttgcatcatcgtc |
11558116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 12064193 - 12064305
Alignment:
| Q |
108 |
ctgtgatcgctttgtaggatctttgaggaattcaaaaactttttgagcaggcagagggagccaaagggtggtagcagcagtaacaatagtgccatttggc |
207 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |
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| T |
12064193 |
ctgtgatcgttttgtaggatctttgagcaattcaaaaactttctgagcaggcagagggagccaaagagtggtagcagcagttacaacagtgccatttggc |
12064292 |
T |
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| Q |
208 |
tggcttgtatcat |
220 |
Q |
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| T |
12064293 |
tggcttgtatcat |
12064305 |
T |
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