View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3168_low_9 (Length: 261)
Name: NF3168_low_9
Description: NF3168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3168_low_9 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 11558928 - 11558683
Alignment:
| Q |
16 |
gaaactttcttgtagaatcaccatttgcctctgagtagggatgaatgattggtccccatgnnnnnnnnttggaatcaatataattaattataagtgattg |
115 |
Q |
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| T |
11558928 |
gaaactttcttgtagaatcaccatttgcctctgagtagggatgaatgactggtccatatgaaaaaaaattggaatcaatataattaattataagtgattg |
11558829 |
T |
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| Q |
116 |
gatgttgtatactataccgaataaattctagggtttaagagttgtcatcattttatatatacaattgaagcataaattttaaagaaatggtaaatacctt |
215 |
Q |
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| T |
11558828 |
gatgttatatactataccgaataaactctagggtttaagagttgtcatcattttatatacacaattgaagcataaattttaaagaaatggtaaatacctt |
11558729 |
T |
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| Q |
216 |
aataactgaaatgcaattgccatgataaggtccatttgaaatgtgt |
261 |
Q |
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| T |
11558728 |
aataactgaaatgcagttgccatgatagggtccatttgaaatgtgt |
11558683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 138 - 261
Target Start/End: Complemental strand, 11545345 - 11545221
Alignment:
| Q |
138 |
aaattctagggtttaagagttgtcatcattttatatatacaattgaagcataaattttaaa-gaaatggtaaataccttaataactgaaatgcaattgcc |
236 |
Q |
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| T |
11545345 |
aaattctagggcataggagttgtcataattttatatacacaattgaagcataaattttaaaagaaatggtaaataccttgataattgaaatgcaattgcc |
11545246 |
T |
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| Q |
237 |
atgataaggtccatttgaaatgtgt |
261 |
Q |
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| T |
11545245 |
atgataaggtccatttgaaatgtgt |
11545221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 11545483 - 11545424
Alignment:
| Q |
16 |
gaaactttcttgtagaatcaccatttgcctctgagtagggatgaatgattggtccccatg |
75 |
Q |
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| T |
11545483 |
gaaactttcttgtagaatcatcatttgcctttgagtagggatgaatggctggtccacatg |
11545424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 11545410 - 11545372
Alignment:
| Q |
104 |
tataagtgattggatgttgtatactataccgaataaatt |
142 |
Q |
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| T |
11545410 |
tataagtaattggatgttgtatactataccgaataaatt |
11545372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 12064055 - 12064102
Alignment:
| Q |
16 |
gaaactttcttgtagaatcaccatttgcctctgagtagggatgaatga |
63 |
Q |
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| T |
12064055 |
gaaactttcctgcagaataaccatttgcctctgagtagggatgaatga |
12064102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 12064103 - 12064151
Alignment:
| Q |
213 |
cttaataactgaaatgcaattgccatgataaggtccatttgaaatgtgt |
261 |
Q |
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| T |
12064103 |
cttaataattgaaatgcagtttccatgatagggtccatttgaaatgtgt |
12064151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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