View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3170_high_9 (Length: 270)
Name: NF3170_high_9
Description: NF3170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3170_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 56 - 252
Target Start/End: Complemental strand, 5503920 - 5503724
Alignment:
| Q |
56 |
ccaataattcatcctcaactcttcaacactcacaaaattgatccaaatccagataaatcatcaacactaaattttttgaaactatgttataacaactact |
155 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5503920 |
ccaatagttcatcctcaactcttcaacactcacaaaattgatccaaatccagataaatcatcaacactaaattttttgaaactatgctataacaactact |
5503821 |
T |
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| Q |
156 |
gctactgttacaaagaagagagaagatgaagcaacagtggctatggtggaaactcaaacaagaaaggctcagcagaatacatctacgacgatttcaa |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5503820 |
gctactgttacaaagaagagagaagatgaagcaacagtggctatggcggaaagtcaaacaagaaaggctcagcagaatacatctacgacgatttcaa |
5503724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 56 - 251
Target Start/End: Original strand, 121604 - 121799
Alignment:
| Q |
56 |
ccaataattcatcctcaactcttcaacactcacaaaattgatccaaatccagataaatcatcaacactaaattttttgaaactatgttataacaactact |
155 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
121604 |
ccaatagttcatcctcaactcttcaacactcacaaaattgatccaaatccagataaatcatcaacaataaattttttgaaactatgctataacaactact |
121703 |
T |
|
| Q |
156 |
gctactgttacaaagaagagagaagatgaagcaacagtggctatggtggaaactcaaacaagaaaggctcagcagaatacatctacgacgatttca |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
121704 |
gctactgttacaaagaagagagaagatgaagcaacagtggctatggcggaaagtcaaacaagaaaggctcagcagaatacatctacgacgatttca |
121799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 56 - 252
Target Start/End: Original strand, 13882935 - 13883131
Alignment:
| Q |
56 |
ccaataattcatcctcaactcttcaacactcacaaaattgatccaaatccagataaatcatcaacactaaattttttgaaactatgttataacaactact |
155 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13882935 |
ccaatagttcatcctcaactcttcaacactcacaaaattgatccaaatcaagataaatcatcaacactaaattttttgaaactatgctataacaactact |
13883034 |
T |
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| Q |
156 |
gctactgttacaaagaagagagaagatgaagcaacagtggctatggtggaaactcaaacaagaaaggctcagcagaatacatctacgacgatttcaa |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13883035 |
gctactgttacaaagaagagagaagatgaagcaacagtggctatggcggaaagtcaaacaagaaaggctcagcagaatacatctacgacgatttcaa |
13883131 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 56 - 252
Target Start/End: Original strand, 51219715 - 51219911
Alignment:
| Q |
56 |
ccaataattcatcctcaactcttcaacactcacaaaattgatccaaatccagataaatcatcaacactaaattttttgaaactatgttataacaactact |
155 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51219715 |
ccaatagttcatcctcaactcttcaacactcacagaattgatccaaatctagataaatcatcaacattaaattttttgaaactatgttataacaactact |
51219814 |
T |
|
| Q |
156 |
gctactgttacaaagaagagagaagatgaagcaacagtggctatggtggaaactcaaacaagaaaggctcagcagaatacatctacgacgatttcaa |
252 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51219815 |
gctactgttacaaagaagagagaggatgaagcaacagtggctatggtggaaactcaaacaagaaaggctcggcagaatacatctacgacgatttcaa |
51219911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 8912877 - 8912838
Alignment:
| Q |
206 |
aactcaaacaagaaaggctcagcagaatacatctacgacg |
245 |
Q |
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||||| |||||||||| ||||||||||||||||||||||| |
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| T |
8912877 |
aactccaacaagaaagactcagcagaatacatctacgacg |
8912838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 16215767 - 16215810
Alignment:
| Q |
148 |
caactactgctactgttacaaagaagagagaagatgaagcaaca |
191 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
16215767 |
caactactgctactgttactgataagagagaagatgaagcaaca |
16215810 |
T |
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