View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3170_low_1 (Length: 719)
Name: NF3170_low_1
Description: NF3170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3170_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 11 - 383
Target Start/End: Complemental strand, 28544191 - 28543819
Alignment:
| Q |
11 |
cacagaacaggccacattcatcgccatgaacaatttaatcgtcaagatctatgattaaaaatcatgttagaacaaaactaatgagattatacttgtcata |
110 |
Q |
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| T |
28544191 |
cacagaacaggccacattcatcgccatgaacaatttaatcgtcaagatctacgattaaaaatcatgttagaacaaaactaatgagattatacttgtcata |
28544092 |
T |
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| Q |
111 |
tcaagttgattagtnnnnnnnnnnnnnnnnnnngtaagtataatcggtgattagggtttaccctcgcatctttggtggcgtagattaggtatgtgacgat |
210 |
Q |
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| T |
28544091 |
tcaagttgattagtaaaaaaataaaactaaaaagtaagtataatcggtgattagggtttacccttgcatctttcgtggcgtagattaggtatgtgacgat |
28543992 |
T |
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| Q |
211 |
atatattgtttcaatgacacacccagctgaattaatcgtaatgagtagaaaagcatgtttcttgacgaaaccataatataaccataacatggagctgaat |
310 |
Q |
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| T |
28543991 |
atatattgtttcaatgacacacccagctgaattaatggtaatgagtagaaaagcatgtttcttgacgaaaccataatataaccataacatggagctgaat |
28543892 |
T |
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| Q |
311 |
agagccaccaagtaaggcaacgattggaatccttccgtcgacttctttttccatattcggtaaaatgttggcc |
383 |
Q |
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| T |
28543891 |
agagcaaccaagtatggcaacgattggaatccttccgtcgacttctttttccatattcggtaaaatgttggcc |
28543819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 459 - 653
Target Start/End: Complemental strand, 28543743 - 28543549
Alignment:
| Q |
459 |
gaaattaacatatacttacaggggtgccaagtacaccatggaggaaatgatgttacctaagcatcaaaaggaggacaatatgttaagttcttgatttgct |
558 |
Q |
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| T |
28543743 |
gaaattaacatatacttacaggggtgccaagtacaccatggaggaaatgatgttacctaagcatcaaaaggaggacaatatgttaagttcttgatttgct |
28543644 |
T |
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| Q |
559 |
catagatattcagaaattaaaataatgcgatggttgattcaatagaagtaggatatattggaatttttctcctctaaattgattgaatattaagt |
653 |
Q |
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| T |
28543643 |
catagatattcagaaattaaaatagtgtgatggttgattcaatagaagtaggatatattggaattttcctcctctaaattgattgaatattaagt |
28543549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 673 - 704
Target Start/End: Complemental strand, 28543534 - 28543503
Alignment:
| Q |
673 |
aaggatgatatttcatcatacatccttgatta |
704 |
Q |
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| T |
28543534 |
aaggatgatatttcatcatacatccttgatta |
28543503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 516
Target Start/End: Original strand, 1185887 - 1185932
Alignment:
| Q |
471 |
tacttacaggggtgccaagtacaccatggaggaaatgatgttacct |
516 |
Q |
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| T |
1185887 |
tacttacagaggagccaagtacaccatgcaggaaattatgttacct |
1185932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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