View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3170_low_13 (Length: 254)

Name: NF3170_low_13
Description: NF3170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3170_low_13
NF3170_low_13
[»] chr1 (2 HSPs)
chr1 (80-254)||(30500478-30500643)
chr1 (8-46)||(30500397-30500435)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 80 - 254
Target Start/End: Original strand, 30500478 - 30500643
Alignment:
Q  80 ggtgaacaactcttgagataattttaagtatacaatttttattggacattaaatgaagacaatacaattaattaaatggcaccctataagttataactct 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||       |||||||||    
T  30500478 ggtgaacaactcttgagataattttaagtatacaatttttattggacattaaatgaagacaataaaattaattaaatggcaccc-------tataactct 30500570  T
Q  180 atctttattttctcacctttttatcaattttacggattactaaaatacacaaaacaaaacacaagagagcaacaa 254  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||| |||||||| ||||||    
T  30500571 atctttattttctcaactttttatcaattttacggattactaaaatacac--aacaaaaaacaagagaacaacaa 30500643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 30500397 - 30500435
Alignment:
Q  8 ccaagaatatacgaggcataaaggtaagtattgagtttt 46  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  30500397 ccaagaaaatacgaggcataaaggtaagtattgggtttt 30500435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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